Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2548 |
Symbol | |
ID | 1184200 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2812959 |
End bp | 2815562 |
Gene Length | 2604 bp |
Protein Length | 867 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637393919 |
Product | clpB protein, putative |
Protein accession | NP_792358 |
Protein GI | 28869739 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
TIGRFAM ID | [TIGR03345] type VI secretion ATPase, ClpV1 family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.575234 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCGATG TAGACCTGCA GCAACTCGTT AAAGCCCTGG ATGCCCCCAC ACGCAACGAA CTCGAGGGGG CCGCAGGGCG TTGCGTGTCC AGAGGCAGTA GCCAGATTCT CGTTGAGGAT ATGTTGCCTG GCTTGCTGGA ACGACCGGAT GGAATGCTGA TGCGTGCGCT ATCGGACGCA GATGTCTCGA CTGCCGAATT CGCAGGCCTG ATCCTTGTGC CTGTTGAGCA TAGCGTCGAC CGAACCCCGG TATTCGCCGC CGAACTTGTT CAATGGTTTC AGGACGCACT TCTTATTGCC ACGCTGGATT TGGGGCAGAG TCACATTGAT CAGGCTGCGC TGATTCTTGC GCTGCTGCGC AACCCGTTGC GTTATGCCGA TCGTCCCTAC CAGCCACTCC TGGCGAAAAT CAACATTGAA CGCTTTCGGG ACTATGTGCT TTCCAGGCAG GCATCCGGCA CAGCAAGGCA AGCGATACAT CAATCTGATT CACTGCTCGA ACGCTTCACT CATAACCTGA CGCAGCAGGC CCGAGAGGGG TCGCTTGATC CGGTGCTGTG CCGGGACGAC TGCCTGCGGC AGATGGTCGA CATACTGGCT CGCCGCCGCA AGAACAATCC GATTGTGGTG GGCGAGGCGG GTGTTGGCAA AACTGCAATT GTCGAAGGGC TGGCGCTGAG AATCGTTCGG GGTGAAGTTC CTGACCTATT GAAAGATGTC GAACTGTTGT CTCTTGATAT GGGCCTGCTC CAGGCAGGTG CCAGTATCAA AGGCGAGTTC GAGCGTCGCT TGAAGGGCGT CATTGACGAG GTCAAGTCTT CGCCGGGCTC TTTCATTCTG TTCATTGATG AAGCCCACAC TCTGATCGGC GCAGGTGCAA ATGCTGGAGG CTCAGACGCT GCCAACATTT TGAAGCCAGC ACTGGCACGT GGCGAACTGC GCACTATCGC GGCAACCACC TGGGCCGAAT ATCGACAATA CTTTGAGAAG GATCCGGCGC TTGCACGTCG CTTTCAGCCG GTTCGCGTGC TTGAGCCCAC GGTCGAACAA GCCGTCACCA TCCTGCGCGG GCTCGCTCCA CTGTATGAAC AGAGCCATGG CGTCTATCTA CGCGACGATG CGGTGGTGGC CGCTGCCCGG CTGTCGGCAC GCTATATATC CGGTCGGCAG CTGCCAGACA AGGCAATCGA TCTGCTTGAT ACAGCCTGCG CCCGAGTGCA AATCAGTCTG GTCGCGGTGC CTGAGCGCCT TGAGCATCTT CGCAGCGAGA TGGTTCAGCA GCAGAGACAC CTTGAGGCCG TGCAGCGTGA TGCCGATGCA GGCTTGTCGG TGGATGACAA GGTGTTGAGT ACACTGGCAT CCAGTGTGTC GCGTATCCGC AAGGAAGCCA TCGTGCTTGA AGACGCCTGG CTTGATCAGC GAAAAACCGC CAGGCGGGTG CTTGATCTGC GTCAGCAACT TGCCCACCGA AAAATACAGC AGAACGCTCT GACCACTCTG GACAGTGATT GTCAGGCCAC CCAGGCGCTG GAGTCCGAAT TGGCTCAGGC TCAGCAGACG ATCCTCAGCA CGCAGCTGAA AGACCGTCTG GTGAGCTTCG AAGTATGTCC CAGGTTAGTC GCGCAAGTGG TCAATGCCTG GACCGGCATA CCGCTGTCGC AGCTGGTCCA GGAACACAGC CTTTCCATTG CAGATTTTTC GTCTGACCTG CGTCTGCGCA TTCGGGGACA GGAGCAGGCT GTGCAGGTTC TTGAAAGGGC AGTGAAGGCG TCGGCGGCAG GTTTGAATGC GCCGAATGCA CCTACTGGCG TGTTCCTTCT GGTGGGTCCC AGTGGCGTGG GCAAGACCGA AACCGCTATC GCTCTGGCTG ATCTTTTATA TGGCGGCGAG CGCTTTCTTA CGACGATCAA TATGTCCGAG TTTCAGGAAA AGCATACGGT CTCACGCTTG ATCGGCGCGC CTGCGGGCTA CGTTGGCTAT GGCGAGGGAG GCATGTTGAC CGATGCCGTT CGACAGAAGC CGTACTCGGT GATTCTGCTT GATGAAGTCG AGAAGGCTGA CCCGGAAGTA ATGAACCTGT TCTATCAGAT ATTCGACAAG GGTGTCGCCA ACGACGGCGA AGGCCGGGAA ATCAACTTCC GCAACACGCT TATTCTGATG ACTTCCAATC TGGGCGGTGA TCTGATCCAT GCGAGCTGCC GAGAGGGTGA GCGTCCGGAT GCCGACGAGC TGGCTATGAG AATAAAGCCG CTACTCACCG CGCATTTCAA GCCTGCTTTA CTGGCCAGGA TGCGAGTAGT GCCTTATTAC CCCGTTACGG GGGTGGTGCT CCATGAATTG ATCGAGTTGA AACTGAGCAG GCTTGGGGAA AGGCTCGAAT GCCGCGGGCT GACCTTCAGT TATTCTCCGG ATCTGACTCG CTATCTGCTT GAATGCTGCA CCCAAAGCGA CAGCGGTGCG AGGTTGATTG ATCACGTGCT GGAGTCACGC GTGACGCCGC TCATCGCCGA CCGACTGCTG AGTGCCGCGA GCAGCGGTGA CAGCGTCTCC AGGGCGCACG CAACACTTGA CGCTTCTGGC GGCATTGTCT GTGAGTTCGA ATAA
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Protein sequence | MIDVDLQQLV KALDAPTRNE LEGAAGRCVS RGSSQILVED MLPGLLERPD GMLMRALSDA DVSTAEFAGL ILVPVEHSVD RTPVFAAELV QWFQDALLIA TLDLGQSHID QAALILALLR NPLRYADRPY QPLLAKINIE RFRDYVLSRQ ASGTARQAIH QSDSLLERFT HNLTQQAREG SLDPVLCRDD CLRQMVDILA RRRKNNPIVV GEAGVGKTAI VEGLALRIVR GEVPDLLKDV ELLSLDMGLL QAGASIKGEF ERRLKGVIDE VKSSPGSFIL FIDEAHTLIG AGANAGGSDA ANILKPALAR GELRTIAATT WAEYRQYFEK DPALARRFQP VRVLEPTVEQ AVTILRGLAP LYEQSHGVYL RDDAVVAAAR LSARYISGRQ LPDKAIDLLD TACARVQISL VAVPERLEHL RSEMVQQQRH LEAVQRDADA GLSVDDKVLS TLASSVSRIR KEAIVLEDAW LDQRKTARRV LDLRQQLAHR KIQQNALTTL DSDCQATQAL ESELAQAQQT ILSTQLKDRL VSFEVCPRLV AQVVNAWTGI PLSQLVQEHS LSIADFSSDL RLRIRGQEQA VQVLERAVKA SAAGLNAPNA PTGVFLLVGP SGVGKTETAI ALADLLYGGE RFLTTINMSE FQEKHTVSRL IGAPAGYVGY GEGGMLTDAV RQKPYSVILL DEVEKADPEV MNLFYQIFDK GVANDGEGRE INFRNTLILM TSNLGGDLIH ASCREGERPD ADELAMRIKP LLTAHFKPAL LARMRVVPYY PVTGVVLHEL IELKLSRLGE RLECRGLTFS YSPDLTRYLL ECCTQSDSGA RLIDHVLESR VTPLIADRLL SAASSGDSVS RAHATLDASG GIVCEFE
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