Gene PSPTO_2543 details

Gene Information

• Locus tag: PSPTO_2543
• ID: 1184195
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 2807665
• End bp: 2808165
• Gene Length: 501 bp
• Protein Length: 166 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 637393914
• Product: hypothetical protein
• Protein accession: NP_792353
• Protein GI: 28869734
• COG category: [S] Function unknown
• COG ID: [COG3516] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03358] type VI secretion protein, VC_A0107 family

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0150995
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCAGAG AAGGCTCTGT TGCGCCCAAA GAACGGATCA ACGTCACATT CAAACCAGCC 
ATCGGGAGCG CGCAGGAAGA AATAGAGCTA CCGCTGAAAC TTCTGGTTCT CGGCGACTTT 
ACACAGCGGT TCGATGAACG AAAGCTCGAA GACCGTAAGT CGATCAGCAT CGACAAGAAT 
AATTTCGATG ACTTCATGGC CAAGCAAGAG CTGGAACTTG CGTTGATCGT GCCTAATCGT 
TTGCAGGCTG ACAGTGAGGT TGATGACTTG ACTGTCAGCA TTAAAGTGGC CTCGATGAAA 
GATTTCAACC CAGCCAGCCT CGTGGAGCAA ATTCCCGAAC TGAAAAAACT GATGGAACTT 
CGTAATGCGT TGATGTCGTT AAAAGGACCC TTGGGTAATA CGCCTGCTTT TCGCAAGGCT 
ATCGAGAAGG TCATTTCTGA CAATGAATCA CGTGGGAAGG TGCTAGACGA GCTCGGCCTC 
GGTGTAGTAG CGCAGCAGTG A 

 

Protein sequence

MAREGSVAPK ERINVTFKPA IGSAQEEIEL PLKLLVLGDF TQRFDERKLE DRKSISIDKN 
NFDDFMAKQE LELALIVPNR LQADSEVDDL TVSIKVASMK DFNPASLVEQ IPELKKLMEL 
RNALMSLKGP LGNTPAFRKA IEKVISDNES RGKVLDELGL GVVAQQ