| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2539 |
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| Symbol | hcp-1 |
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| ID | 1184191 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 2803874 |
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| End bp | 2804389 |
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| Gene Length | 516 bp |
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| Protein Length | 171 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637393912 |
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| Product | secreted protein Hcp |
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| Protein accession | NP_792351 |
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| Protein GI | 28869732 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0301409 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCTACAC CCGCATTTCT ATCTGTCACA GGGACCAAAC AAGGTCATAT TACAGAACAG
GCTGGTTCCA TTGACTCTTT AGGCGGCCAT GGCCAGATAG ATCATCCTGA CGAATCAATT
GTTCACGCAT TCAGTCACGA AATCATATCC CCTTACGACG CTCAGTCAGG CGAAATTACT
GGTCGACGCA GGCATAACGC AATTTGTATC ACAAAAGTAT TTGACCGGGC ATCGCCATTA
CTTCTGGAAG CGTTATGCAG GGGCGAAAAA CTAACTGACG TTGTGATAAA TTGGTACCGC
ACTAACGACG GCAAGGAGCA AAACTACTAT AGAACAACAC TTCATGGGGC GCTTATTGTG
GCTATAAAAG ACCACATGCC AACCTGCGAC GATCCAAATA ACTCGCATGC CATCCATCTG
CAGGATGTGC ACTTTACCTA CCGTCAAATA AGATGGGATC ACGTGATAGC TACTTCATCC
GGATCATACG ACCTGGACGA CTTAGGTCTG GACTGA
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| Protein sequence | MPTPAFLSVT GTKQGHITEQ AGSIDSLGGH GQIDHPDESI VHAFSHEIIS PYDAQSGEIT
GRRRHNAICI TKVFDRASPL LLEALCRGEK LTDVVINWYR TNDGKEQNYY RTTLHGALIV
AIKDHMPTCD DPNNSHAIHL QDVHFTYRQI RWDHVIATSS GSYDLDDLGL D
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