| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2538 |
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| Symbol | |
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| ID | 1184190 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 2801756 |
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| End bp | 2803798 |
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| Gene Length | 2043 bp |
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| Protein Length | 680 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637393911 |
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| Product | Rhs element Vgr protein |
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| Protein accession | NP_792350 |
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| Protein GI | 28869731 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGTCCG AAATAATCTC GCTCCCCCAC TTCAGTCTGA GCCTTTCTGA CGCCCACCAT
GACTTTCAAG TCTTCGCCTT CACCGGTCAC GAAGCCATCA GCCAGCCCTT CTGCTTCAAG
CTGGATCTGG TCAGCGAGCA CACTTCGCTG GATCTTGAAA GTTTGCTGGG GCGCTCAGCG
TTCCTAAAGT TTGCACCCGA CGGCGGTGGA ATCCATGGCC TGATCGATCA GATTGCCCAA
GGCGAATCCG GTCGACGTTT GACTCACTAT TCGATCACGT TGCGCCCGCA CCTGGCCCGG
CTTGAGCATC GTACTGATCA GCGTATTTTT CAGGACCTGA CGGTGCCCCA GATCATTGAA
CAGGTACTTG AAAAGCACGG CCTGCTGGCC ACCACGTTCA ATTTTCATCT AGGAACGAAC
TACCCGAAAC GCGATTACTG CGTGCAATAC GGCGAGTCTG ACTTGCACTT CATTCAGCGG
CTGTGCGAAG AAGAAGGCCT GCACTACCAC TTCGAGCACA GCGCTACCGC CCATCAACTG
GTGTTTGGTG ACGACCAGAC AGTGTTCCCG GAACTGGGCC CGGTTATCTA CAGACAGGAC
ACCGCCCTGG CGGGCACAAA GCCGGCCATC CAGCACTACA GACTGCGCCT GGAGACGCGC
CCCAACAGTC ACCATAGCCG CGATTACCAT TTCGAGAAGC CGCTGCTGAT CACCAAGGGA
TCGGCCAATG TCAGTCGTCG TATCGAGCTC CAGGAATACG ACTACCCGGG CGGCTTCACC
AGCCGTGATC GTGGCGATCA TCTTGCACAA CGCGCGCTGG AGCGCCTCAA TCACGATTAC
CTGTCAGGTG AAGGTCGCAG TAACCAGGCT CGGCTCGTCA GTGGCCATTT TCTGAGGCTG
AGCGAACATC CCAACAAGGA ATGGAATGAT CTGTGGCTGC TGACCGGCGT TCGTCATGAA
GGCCGTCAGC CGCGGGTACT TGAGGAGTCC GCATGTGAAA TTCAGAACCC CGGCGACTTT
CATCAGGGCT ACCGCAATAC GTTCACTACC ACGCCTTGGT ACGCCTTGTA CCGCTCGCCC
CTGCGTCATC CCAAACGAAG AATCTTCGGC AGTCAGACCG CCGTGGTCAC AGGCCCGAAA
GGTGAGGAAA TCCACTGCGA CAAACACGGT CGGGTCAAAG TGCAGTTCCA CTGGGATCGC
GACGCTGAGG CCGATGACCG GAGCAGTTGC TGGTTGCGCG TGTCATCCAG TTGGGCGGGC
AATCGTTATG GCGGCATGAC CATCCCGCGT GTCGGTATGG AAGTGCTGGT AACGTTTCTT
GAGGGCGACC CCGACCGGCC ACTGGTCAGT GGCTGCCTGT ACCACGCCGA GCACGTACCG
CCTTATGACC TGCCCGCCCA CCAGACGCGC AGCGTATTCA AGACCTTGAG TAGTCCAGGC
GGAGGTGGCT CAAACGAGCT GCGTATCGAA GACAGGGCCG GCCAGGAGCA AATCTATGCT
CACGCCCAGC GCAATTGGGA CCAAAACATC AAACATGATC AAAAGATCCG AATTGGTCAT
GAGCGTCATG ACCGCGTGGA AGCAAACAGC TACAGCGAGT TCAAGGCTCA GGAACACCGT
CTGGTTGATG GCGACCGGCT GACTGAAGCC AAAGCGGACG ACCATCTGAG GGTAGGTGGG
ACTCGGCACC TGAAACTGGG TAATGCACTG CTGGCAGAGG CTGGGCAGGA AATCCATTTG
AAGAGTGCCG ACAAGATTGT TCTGGAGGCT GGCATGGAGC TGACATTCAA AGTGGCTGGC
AGCTTCATAA AGATTGACGC AAGCGGCGTG ACGGTGGGAG GGCCTGCCAT CCATTTGAAC
TCCGGGGGAA GCCCGGGCAG TGGCTCCGGC GCAACCCCCT TGCTGCCGGG TCCGACACTG
CGAGCTGATA CGACCAAGCC TGGGGAGGTT CTTGCACATG CCCAGAGGCG GGCCATGAGG
CGCACGCCAC GTTGTGAGGT TTGCGAACAA CAGGCTGCGA AAAAGAGGTC GCGCAATGGA
TAA
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| Protein sequence | MQSEIISLPH FSLSLSDAHH DFQVFAFTGH EAISQPFCFK LDLVSEHTSL DLESLLGRSA
FLKFAPDGGG IHGLIDQIAQ GESGRRLTHY SITLRPHLAR LEHRTDQRIF QDLTVPQIIE
QVLEKHGLLA TTFNFHLGTN YPKRDYCVQY GESDLHFIQR LCEEEGLHYH FEHSATAHQL
VFGDDQTVFP ELGPVIYRQD TALAGTKPAI QHYRLRLETR PNSHHSRDYH FEKPLLITKG
SANVSRRIEL QEYDYPGGFT SRDRGDHLAQ RALERLNHDY LSGEGRSNQA RLVSGHFLRL
SEHPNKEWND LWLLTGVRHE GRQPRVLEES ACEIQNPGDF HQGYRNTFTT TPWYALYRSP
LRHPKRRIFG SQTAVVTGPK GEEIHCDKHG RVKVQFHWDR DAEADDRSSC WLRVSSSWAG
NRYGGMTIPR VGMEVLVTFL EGDPDRPLVS GCLYHAEHVP PYDLPAHQTR SVFKTLSSPG
GGGSNELRIE DRAGQEQIYA HAQRNWDQNI KHDQKIRIGH ERHDRVEANS YSEFKAQEHR
LVDGDRLTEA KADDHLRVGG TRHLKLGNAL LAEAGQEIHL KSADKIVLEA GMELTFKVAG
SFIKIDASGV TVGGPAIHLN SGGSPGSGSG ATPLLPGPTL RADTTKPGEV LAHAQRRAMR
RTPRCEVCEQ QAAKKRSRNG
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