Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2535 |
Symbol | |
ID | 1184187 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 2797493 |
End bp | 2800933 |
Gene Length | 3441 bp |
Protein Length | 1146 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637393908 |
Product | hypothetical protein |
Protein accession | NP_792347 |
Protein GI | 28869728 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.54787 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATACCG TCAGAAAACC CATAACACCA CGGATGCTCA GCATGACCGA TAAAAACGGC ACCCATCGAC AACGACGTGC TGCACTGTTC CCCAAAACCC CGGCGACCGC CACCAGCCTG TGCCCTTTCA GAGGGCCTAA TATCGCCATC GTCCCGGTGC GCTATGCGCT GGATCGCTCG CGCTATGACG CTGACCCCGC GCAACTGAAG CCACTGCCCA AAGACGGCCA ATGGGCCCAC CTGCCGACGC TGAAAACTCG CAGTTACACC TTACGCCAAC TGTACGACGG CTACGTTTAC GTGTTCGACG AAACGGCCGG CACGTTGCAC GAATACGCAG CCTCAGCCAG CGACGGCCAT CTGAGCCGCA TCGTCTGGAC CGATGCACAC ATCGGTAACG ACCAGCGAAG CGGTGCCGGT GAAGGGCAAC CCTTTGTGCT TTACCCGCGT GACCACCGCC TGCACATCGC CTTTTCTCCC CTGCAATGGA CATGGCGAAT GTGCGAGCAC ATGCGCTCCC ACGCCCCAAG CCGCGCGTTG TGGATGAAGG CGCTGGACCT GGCCAGCTAC TGCCTCACCA TGGCCGAACC GGACACCCTG CCGCTGGATC GCATCGCCGA GGCCGTGGCG GATATCGACA AAGACTGTGT TGTGGAAGAT GGCCGTTTTG CAGATTCGGC GATTCCCAGT GTTCGCCCGC CATCAGAAGG TGCAGAACCC TATCCGTTAT GGGCACCGCT GGGCGCCGAT GTCTTCTGGC AGGGCAGCGT CTACGATCAG GACAGCTCTC TGGTCATTGC CCTCAATGAC CCGCTCGCCG TTTTCAACGA CTTGGGCATG CAGCTGGCGG CCGATCAGGC GGCTTTTCGG GAATGGCAAA GCGCCCACGA ACACAAGATC CAGATTGCCC AGACCGTCGC CACGCTGTGC GGTGCAGAGA GCGAAGCAGA GAAGCTGCCA GCATCGGTGC GCGGTGATGC GCTGCGCACG CATCAGTACC TGAGCGAGGT CGAAGCCTAC TTTGAACAAT GCATTCTTGA AGAAGCACAG ATCAGCAGTA GCAACGTTCC TGGAGATTTT CTGCTGCTGC CGGACATGTT CAAGAGCCTG GACATGCGCA AATCGATCGA AACACGTTAT GGCAGCGCGC CGACCGATGA GGGCGCGCAG GCCTGGAAAG ATCGCCACAA ATGGCGGCGC GAGGTCGATC TGAGCAGTGC GCGTCAGTAC CTTTTGCAGC ACCTGCCGAC CGGAGACAAA CGCCTGCAAC AGGTGCGTGA CACGCAAAGC GATTTCCAGC ACTGGGCGGC ACATATAGGC ACCGAACCGC TCAAGCTGTT CATCGACACC ACACACCCGA AAACCCTGCT GTATTTGCAG ACGATCATGC TCAATCTGCA GATCATCTAT GCGCAGGACA GCGCCGCAAA TGCCTGGCTC GCCGAGCAGG AAGCCAACAC CAGCAGCCTG TTTGGCACCC TGCGTTATGG TTTTTCGCCA GCGCTCAAGC ACGCCCTGCA TCAGGAAGCC GACGCACTGC TGAACGGCCT CGGCGACGTC ACTAATCTGG CCACGCGCAT CGGTGAACTC AATGGCGTGC TCAACCATCA GGGTTTTGCC GACAAGCCGT GGATGAAGGC GCTGAAACAG CCTGTTCAAG ACACCTTCAA AGCCCTCGGC GAACTGGCCA GCGGTGCCGG CAAAGCCAGG TTTGAAAGTG TATTACTGGC ATGGGTGCCC ATCGACAGCC GCATGGCCCT TGGCAAGCAG CAGAACATCG TTGCGTTGCT TCGCACCCTG CTGATCGGCC AGATATTGCT CGACTCGACA GCACGCGTCG CGATCAATGA GCAGACAGTG ACCAAGCTCA AACAGTGGGT AAGTGAGTGG CAAGTCCTCA ACAAGCAAAT CAGCGAGCTG GTGCGCAGTT GGCAATACCC GAACGCCTAC AACACGCGCC AAAGCACCGC TCGCAAATTG CAGGCCCATA AACACAAACT GCGCGTTCAC GAACTGAGCA TCCCTGCCCT GCTCGACTTT CAGAACAACG AATACGCCAA GCTATTGCAG GACGAGATTC GTCAGTACTT CCAGTCTGGC AAAACCCTCG CCACGGACTG GCTCGCCCGC GCCAAAGGCT GGACCGACCG ACTGGGCGGC GTTGCTGGCA CGATCACCTG GGGCGTGGTC ATGCTTAACC TGATCAATAC CGCCTTCCTC TATCGGGACC TTACCCGGGA CGGGGATTTC AGTACCAAGG ACATTGGCAA GGTGACGTAT GGATTGGGGT ACAGCTTCAA TCTGTTGATG GCGGTGTTTG TGGACGCGCC GTGGAGCATC ATAAGGGACG CAACGCCAGC GCTGATCGAT GGCAAGAATG TGGCCATTCT GGACAGGTCC AGTGCGTACT GGAAAGCCAA GGGAAATGCA GCGTGGGGTG ATGCGATACG TGGGTTCAGG GTTTCGATGG TGGCGATGGG TGGGTTTGGG CTTGCGGCGG TTACGCTTGA ATTATTTGAT GTTACAGATG ATTTTCACGC AGCTAAAACA TCAGAAGAAA CATATGGAAT TGGCATCAAG GGGTTTTCCG TAGTGGTGAT GGGATTGGGT GCTGCGGCCC AGCTAATGGC AGGCATTTCT CCCGCTGGCG TTTTTACGAT TATCGCAATG AGTCCGTGGT TCAGCGTAGC GCTACTGGCA GCAGGCTTGA TTTATCTTTT TGCTACGATG GCCCTTAATT ACTTCAAGCA AGACAGTGTC GGCTGGTGGC TACGCAAGTG CTGTTGGTCC ATAACCCAAG ACTATCGCTA TGCTGAGACT GCGGAAGGTA AGCATGACGA AGTGCGCGCG CTGATGGAAA TAAAATTATC TCCGCAGGTC CATGTAAAAA GCACCGTGAA TTATGAAAAC CGTTATCTTG GCAAAAACGA TCACTACAGC GTAGCGGTAC AAAATGGCGC GGGGGTACAA GTGCGCTTGC CGAATCTTCT ACGCGGGCTG TCCGTGCATT TCAATATCGT TAGTAGCAAG AGACCATGGG GCGTGCTGCC CGTAGAAAAA ATAGATCAGC CGATACATGA AGCTTTTCTG GACCACGGGC AATTCAGGAA AGTCGAACAG TTCGGGATGT TTACCAACAA GCCTGCTGGC AAGGCGAGTG AAGACTATAC CTACCCCCGC ATGCCACCTG AAAACGAAGA CCTCATCTGG GAAACCTGGG TGCCGCTCGA CAAGGACGCA ACGTATCTTG AGTTGCAAAT CTGGTACCCG GCCAATCTTT TAAATCCTGG CGGAGACGAT AGAAGCTATC TGTTTCAGAT GGAGCTTGGC ACAAAAGGCG ATACCGCTAT TGACGGCCTG GCTGCAGTGG AACTCGAGGT AAAGGCATCA AGCAGGATTG GCGCTCTGAC CCTAGAAGTC GCAGAGGGCA CACCTGTATG A
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Protein sequence | MNTVRKPITP RMLSMTDKNG THRQRRAALF PKTPATATSL CPFRGPNIAI VPVRYALDRS RYDADPAQLK PLPKDGQWAH LPTLKTRSYT LRQLYDGYVY VFDETAGTLH EYAASASDGH LSRIVWTDAH IGNDQRSGAG EGQPFVLYPR DHRLHIAFSP LQWTWRMCEH MRSHAPSRAL WMKALDLASY CLTMAEPDTL PLDRIAEAVA DIDKDCVVED GRFADSAIPS VRPPSEGAEP YPLWAPLGAD VFWQGSVYDQ DSSLVIALND PLAVFNDLGM QLAADQAAFR EWQSAHEHKI QIAQTVATLC GAESEAEKLP ASVRGDALRT HQYLSEVEAY FEQCILEEAQ ISSSNVPGDF LLLPDMFKSL DMRKSIETRY GSAPTDEGAQ AWKDRHKWRR EVDLSSARQY LLQHLPTGDK RLQQVRDTQS DFQHWAAHIG TEPLKLFIDT THPKTLLYLQ TIMLNLQIIY AQDSAANAWL AEQEANTSSL FGTLRYGFSP ALKHALHQEA DALLNGLGDV TNLATRIGEL NGVLNHQGFA DKPWMKALKQ PVQDTFKALG ELASGAGKAR FESVLLAWVP IDSRMALGKQ QNIVALLRTL LIGQILLDST ARVAINEQTV TKLKQWVSEW QVLNKQISEL VRSWQYPNAY NTRQSTARKL QAHKHKLRVH ELSIPALLDF QNNEYAKLLQ DEIRQYFQSG KTLATDWLAR AKGWTDRLGG VAGTITWGVV MLNLINTAFL YRDLTRDGDF STKDIGKVTY GLGYSFNLLM AVFVDAPWSI IRDATPALID GKNVAILDRS SAYWKAKGNA AWGDAIRGFR VSMVAMGGFG LAAVTLELFD VTDDFHAAKT SEETYGIGIK GFSVVVMGLG AAAQLMAGIS PAGVFTIIAM SPWFSVALLA AGLIYLFATM ALNYFKQDSV GWWLRKCCWS ITQDYRYAET AEGKHDEVRA LMEIKLSPQV HVKSTVNYEN RYLGKNDHYS VAVQNGAGVQ VRLPNLLRGL SVHFNIVSSK RPWGVLPVEK IDQPIHEAFL DHGQFRKVEQ FGMFTNKPAG KASEDYTYPR MPPENEDLIW ETWVPLDKDA TYLELQIWYP ANLLNPGGDD RSYLFQMELG TKGDTAIDGL AAVELEVKAS SRIGALTLEV AEGTPV
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