Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2490 |
Symbol | |
ID | 1184142 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2752511 |
End bp | 2754322 |
Gene Length | 1812 bp |
Protein Length | 603 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637393863 |
Product | ABC transporter, ATP-binding/permease protein |
Protein accession | NP_792302 |
Protein GI | 28869683 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCCGTTT TAAAACGCTT CACGATTTTT CTGCAGCAGG CCTTGCGGGC CATGCATCTG GTCTGGACCA CTTCCCGTGC GCTGTCCGTC GGCCTGATCC TCGCCACGCT GGTTGCAGGC TTGTTGCCTG CGCTGGCCGC CTGGCTGGGG CAGCGTATCG TCGATGCCGT GGTCAGCGCC ATGCAATTGC ACGCCAGCAC GGGTGACGCG CCGTTATGGC CGGTGTTGCG CTATGTGTTA CTGGAGGCGG GCGTGCTGGC GCTGCTGGCC GGTGCGCAAC GCGGGCTGTC GGTACAGCAG GCGCTGTTGC GGGTGCTGCT GGGGCAGAAG GTCAATACGT TGATTCTGGA GAAAGCCCAG ACCCTGTCAC TGTCCCAGTT CGAGGATTCG GAGTTCTACG ACAAACTCGT GCGTGTCCGG CGTGAAGCCT CGACCCGGCC GCTGGCGCTG GTGACCAAGT CGCTGGGCCT GTTGCAAAAC CTTATTTCCC TGATCAGTTT CGCCGTGCTG CTGGTGCATT TTTCGCCCTG GGCGTTGTTG ATTCTGGTGG TGGGTGCGCT GCCGGTCTTC TTTGCTGAGG CGCATTTTTC CGGCGATGCA TTTCGGCTGT TTACCCGCCG TGCACCCGAA ACCCGTCGGC AGAATTACAT CGAAACACTG CTTTCCCACG AAGGCTATAT CAAGGAGGTC AAGCTGTTCG GCTTCGCGCC GCTGCTGCTC AAGCGCTATC GCGACACCTT TGAACGGCTG TACGCCGAAG ACCGCCGTTT GACCGTGCGC CGTGACGGCT GGGGCTTTCT GCTCGGCTTG CTGGGCACTG CCTCGTTCTA TCTGGCGTAT GCCTGGGTGG TGGTCGATGC CGTGCACGGG CGGATCACGC TGGGTCAGAT GACCATGTAC CTGGTGCTCT TCAAACAGGG GCAAGCCGCG GTCAGCAGTA GCCTCAGCGC AATCAGCGGC CTGTACGAAG ACGGGCTGTA CCTGGCTGAT TTGTACATCT ACCTCGGCCA GCCGGTCACC CCGCCAACAG GCAGCCTCAC GCAGGGCGTG CTGCCCGGTG ACGGCATGCG TTTCGAAAAT GTGAGCTTCA CCTACCCAGG CACCCGCCGT GCGGCACTGG AAAACATCGA CCTGCACCTG GCACCGGGTC GCAGCGTGGC GCTGGTGGGC GAAAACGGTT CGGGCAAAAC CACGCTGATC AAACTGCTGA CGCGGCTGTA TCAACCCGAT CAGGGCCGCA TTCTGCTGGA TGGCAGCGAC CTGCAGGAAT GGCACGAAGA CGCGCTGCGT TCGCGCATTG GGGTGATCTT CCAGGACTTC ATCCGCTATC AGTTTCTGGT CGGCGAGAAC CTCGGTGTCG GCGATACCCA GGCGTTTCAC GATGAAACCC GCTGGCGCGA AGCCGCAGCG CAAGGCATGG CCGCGCAGTT CATCGAGCAG CTCGATAAGG GCTACGCCAC CCAACTGGGC CGCTGGTTCG CGGGCGGTCA GGAGCTGTCC GGCGGGCAGT GGCAGAAAAT CGCCCTGTCG CGCGCCTACA TGCGTCGCGA CGCCGATATC CTGATTCTCG ATGAGCCCAC TGCGGCGCTG GATGCTGGCG CAGAAGCCGC AGTGTTCGAG CATTTTCGTG AATACGCCAG GGGCCGCATG ACGCTGCTGA TTTCCCATCG TTTTTCCAGC GTGCGCAACG CCGAGCACAT CGTGGTGCTG GAACACGGTC GGGTGCTGGA ACGCGGTGAC CATGACAGCC TGATCGCCGC CGCAGGGCGC TACGCCGCGC TGTTTGATCT TCAGGCACAG GGTTATCGTT AG
|
Protein sequence | MPVLKRFTIF LQQALRAMHL VWTTSRALSV GLILATLVAG LLPALAAWLG QRIVDAVVSA MQLHASTGDA PLWPVLRYVL LEAGVLALLA GAQRGLSVQQ ALLRVLLGQK VNTLILEKAQ TLSLSQFEDS EFYDKLVRVR REASTRPLAL VTKSLGLLQN LISLISFAVL LVHFSPWALL ILVVGALPVF FAEAHFSGDA FRLFTRRAPE TRRQNYIETL LSHEGYIKEV KLFGFAPLLL KRYRDTFERL YAEDRRLTVR RDGWGFLLGL LGTASFYLAY AWVVVDAVHG RITLGQMTMY LVLFKQGQAA VSSSLSAISG LYEDGLYLAD LYIYLGQPVT PPTGSLTQGV LPGDGMRFEN VSFTYPGTRR AALENIDLHL APGRSVALVG ENGSGKTTLI KLLTRLYQPD QGRILLDGSD LQEWHEDALR SRIGVIFQDF IRYQFLVGEN LGVGDTQAFH DETRWREAAA QGMAAQFIEQ LDKGYATQLG RWFAGGQELS GGQWQKIALS RAYMRRDADI LILDEPTAAL DAGAEAAVFE HFREYARGRM TLLISHRFSS VRNAEHIVVL EHGRVLERGD HDSLIAAAGR YAALFDLQAQ GYR
|
| |