Gene PSPTO_2485 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2485 
Symbol 
ID1184137 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp2746748 
End bp2747770 
Gene Length1023 bp 
Protein Length340 aa 
Translation table11 
GC content53% 
IMG OID637393858 
ProductISPsy7, transposase 
Protein accessionNP_792297 
Protein GI28869678 
COG category[L] Replication, recombination and repair 
COG ID[COG3547] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00294179 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAACG GCCTCAAGCT CTTAGGCATC GACATTGGTA AAAACAGTTT TCACCTCATA 
GGCCATGATG CAGGCGGCCA CCAAGTATTA CGCAAGTGCT TCAATCGCAA TCGCCTTCTG
CAGTTTGCGG CTCAGATTGA ACCCTGCACC ATTGCAATGG AGTCGTGCGG TGGCTCTCAC
TGGCTTGCCA GGAAACTCGC CTCGCTGGGG CACCGGGTGA AGTTGATTGC TCCGCAACAT
GTGAAGCCCT ACGTGACGGG CAACAAGAAT GACTTCATCG ATGCCGAAGC TATATGCGAG
GCGGCCTCCA GACCACGTAC TCATTACGTT GCCGTCAAGA CTGTGGAGCA GCAGGTACTT
TCTGTACAAC ATCGTCTTCG CCAGTCACTG GTTTGCCACC GTACTGAAGC CATCAACAGG
GTGCATGGTT TTTTGCTTGA GTTTGGAATT GCCTTGCCAG CCACCAAGGC AGCGATCGCC
AAAGTGCCTG AGCTGATTGA CGATTCACGT AGCGACCTGC CGCTGCAGTT CAAAAGGGTC
ATGGAGCATT TGCTGGAGGA TATTCATCGC CTTGATACCG AAATAAAGGC CTGTGATGCG
CAAATCAAGC AGCAACTGGC GCAAGACGAT GCTGGTACAC GCTTGATGAC GATTCCTGGC
ATTGGTCCTA TTACCGCCAG CGCATTTGTA GCGGATCTGG GTGACGCTTC CAATTTTCGA
GCCTCACGAG ACCTTTCCGC TTTTCTGGGG CTGGTTCCCA GACAGTTCTC TACAGGCGGG
AGACCCGTAT TGCTGGGTAT CAGCAAGCGA GGTGACAGGC ACCTGCGAAC CCTGTTGGTG
CAAGGTTCTC GAGCGCTCAT GATTCGAATA GAACGCCGCG ATGATGCCCT TGGGCAGTGG
GTAAGAGACT TGTTGGCACG CAAGCATCCG AACAAGGTGG CATGTGCTTT AGCGAACAAG
CTGGCAAGAA TCGTATGGGC GGTGCTCAGA CGAGGTAGCA CTTACAACGC ATCAATGATC
TGA
 
Protein sequence
MKNGLKLLGI DIGKNSFHLI GHDAGGHQVL RKCFNRNRLL QFAAQIEPCT IAMESCGGSH 
WLARKLASLG HRVKLIAPQH VKPYVTGNKN DFIDAEAICE AASRPRTHYV AVKTVEQQVL
SVQHRLRQSL VCHRTEAINR VHGFLLEFGI ALPATKAAIA KVPELIDDSR SDLPLQFKRV
MEHLLEDIHR LDTEIKACDA QIKQQLAQDD AGTRLMTIPG IGPITASAFV ADLGDASNFR
ASRDLSAFLG LVPRQFSTGG RPVLLGISKR GDRHLRTLLV QGSRALMIRI ERRDDALGQW
VRDLLARKHP NKVACALANK LARIVWAVLR RGSTYNASMI