Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2485 |
Symbol | |
ID | 1184137 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2746748 |
End bp | 2747770 |
Gene Length | 1023 bp |
Protein Length | 340 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 637393858 |
Product | ISPsy7, transposase |
Protein accession | NP_792297 |
Protein GI | 28869678 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3547] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00294179 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAACG GCCTCAAGCT CTTAGGCATC GACATTGGTA AAAACAGTTT TCACCTCATA GGCCATGATG CAGGCGGCCA CCAAGTATTA CGCAAGTGCT TCAATCGCAA TCGCCTTCTG CAGTTTGCGG CTCAGATTGA ACCCTGCACC ATTGCAATGG AGTCGTGCGG TGGCTCTCAC TGGCTTGCCA GGAAACTCGC CTCGCTGGGG CACCGGGTGA AGTTGATTGC TCCGCAACAT GTGAAGCCCT ACGTGACGGG CAACAAGAAT GACTTCATCG ATGCCGAAGC TATATGCGAG GCGGCCTCCA GACCACGTAC TCATTACGTT GCCGTCAAGA CTGTGGAGCA GCAGGTACTT TCTGTACAAC ATCGTCTTCG CCAGTCACTG GTTTGCCACC GTACTGAAGC CATCAACAGG GTGCATGGTT TTTTGCTTGA GTTTGGAATT GCCTTGCCAG CCACCAAGGC AGCGATCGCC AAAGTGCCTG AGCTGATTGA CGATTCACGT AGCGACCTGC CGCTGCAGTT CAAAAGGGTC ATGGAGCATT TGCTGGAGGA TATTCATCGC CTTGATACCG AAATAAAGGC CTGTGATGCG CAAATCAAGC AGCAACTGGC GCAAGACGAT GCTGGTACAC GCTTGATGAC GATTCCTGGC ATTGGTCCTA TTACCGCCAG CGCATTTGTA GCGGATCTGG GTGACGCTTC CAATTTTCGA GCCTCACGAG ACCTTTCCGC TTTTCTGGGG CTGGTTCCCA GACAGTTCTC TACAGGCGGG AGACCCGTAT TGCTGGGTAT CAGCAAGCGA GGTGACAGGC ACCTGCGAAC CCTGTTGGTG CAAGGTTCTC GAGCGCTCAT GATTCGAATA GAACGCCGCG ATGATGCCCT TGGGCAGTGG GTAAGAGACT TGTTGGCACG CAAGCATCCG AACAAGGTGG CATGTGCTTT AGCGAACAAG CTGGCAAGAA TCGTATGGGC GGTGCTCAGA CGAGGTAGCA CTTACAACGC ATCAATGATC TGA
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Protein sequence | MKNGLKLLGI DIGKNSFHLI GHDAGGHQVL RKCFNRNRLL QFAAQIEPCT IAMESCGGSH WLARKLASLG HRVKLIAPQH VKPYVTGNKN DFIDAEAICE AASRPRTHYV AVKTVEQQVL SVQHRLRQSL VCHRTEAINR VHGFLLEFGI ALPATKAAIA KVPELIDDSR SDLPLQFKRV MEHLLEDIHR LDTEIKACDA QIKQQLAQDD AGTRLMTIPG IGPITASAFV ADLGDASNFR ASRDLSAFLG LVPRQFSTGG RPVLLGISKR GDRHLRTLLV QGSRALMIRI ERRDDALGQW VRDLLARKHP NKVACALANK LARIVWAVLR RGSTYNASMI
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