| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2463 |
|---|
| Symbol | |
|---|
| ID | 1184115 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 2718060 |
|---|
| End bp | 2720171 |
|---|
| Gene Length | 2112 bp |
|---|
| Protein Length | 703 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637393836 |
|---|
| Product | TonB-dependent siderophore receptor, putative |
|---|
| Protein accession | NP_792275 |
|---|
| Protein GI | 28869656 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.302631 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTCTC GTAGAATCGC GTCTCTGGCA GGCTTGGCAA TCGGGGTATT GGGCAGCAAC
AGCTATGCGC AGGAACAGCC GCAGACTATT GAACTGGGAA GCGTCAACGT CACCTCCGAC
TATCAGTACG AGACCGCCAC CAGCCCGGTT CAGGGCTATC GGGCCACCCG CTCGGCCACC
GCCACCAAAA CCAACAGCGC TATCAGGGAC ATCCCGCAGT CGATCAGCGT GGTGCCTGCT
TCGGTGCTCA AGGACCTGGG CAGCAACAGC GTCGAGCGTG CGCTCGACTT TGCCGGCGGC
GTGTCCAAGC AGAACAATTT CGGCGGCCTG ACGCTCTACG AGTACAGCAT CCGCGGCTTC
ACCACTTCCG AGTTCTACAA AGACGGTTTC AGTGCCAACC GCGGCTACCC GACCACGCCC
GACGCTGCAA ACATCGAGCG TATCGAAGTG CTCAAAGGCC CGGCCGCCAG CCTGTACGGC
CGTGGCGACC CTGGTGGCAC GGTCAATATC GTGACCAAGA AGCCGCAGCG CGAAGCATTC
ACCACCCTGC AAACCAGCGC GGGCAGTTGG GATCGCTACC GCACCGCGCT GGACGTCAAC
ACGCCACTGG ATGAACAGGG CAATCTGCTC TCGCGGGTCA ATCTGGCCGT CGAAGACAAC
AACAGTTTTC GCGATCACGT AGAGAGCAAA CGGGTTTTCG TCGCGCCATC CTTCAGTTGG
CAACTTAACC CTGATACCAG CCTGCTGGTG GAAACAGAAT TCGTCCGACA CACCTCCACC
TTCGACCGTG GCGTGGTCGC GCCCAATAAC AAATGGAGCG GCGTGTCGCG CTCGACCTTT
CTGGGCGAGC CGGACGACGA CATCGATAAC GACAACAACA TGGTCCAGTT CGCACTCGAC
CATCAGCTCA ATGACGTGTG GTCGCTGCGC CTGGCCAGCC ATTACAAGCA AGGCGAGATG
TCAGGTTTTG CCAGCGAGTC GCGCCCGCTG AATGCGGATG GGCGCACCGT CAATCGTCGT
TACCGGGAGC GCGACAACAA CTGGCACGAC AGCATCACCC AGCTGGAATT GCGTGGGCGT
TTCGATGGCT TGGGCGTCGA GCACGAAGTA CTGATCGGCA CCGAATACGA AAACTACCGC
AAGAACGAAC GGGTCACGAC CATCGCCGGC AGCCCTTACG CCATCGACAT CTACAACCCG
GTGTACGGCC AGCCGAAACC CAATGGCGCA CGCTCCGGCA CTGACTTCTA TGAGCACATC
GAAAGCCGTG CGCTGAACCT GCAGGACCAG ATTGTGTTTA CCGACAAACT GCGCGGCATG
GTCGGCACGC GTATCGAGCA CTTCGATCAA CAGGTGGACG ATTTCACCAC CAACGCCACC
TCCGGCCAGC GTCACGATGC GTTCACCCAA CGCGCCGGGC TGCTTTACCA ACTCACGCCA
CAGGTGGGCC TGTTCGCCAA CGCATCCACC TCGTTCAAAC CCAACAACGG TCTGGACGCA
GCCGGCAAGA CCTTCGACCC GGAAGAAGGC GTCGGTTACG AAGTCGGGAT CAAGAGCGAG
CTGTTCGACG ACCGCCTGAG CACCACCCTC GCCGCGTTCC ATATCGAAAA GGAAAACGTG
CTGGCCCTGG ACCCGGGCAC CGACACCAAC CGCGCCGTGG GCAAGGCCCG CAGCCAGGGT
TTCGACCTGC AATTCACCGG GCAAGTCACC GATGCGGTGC GCATCATCGG GGCGTTCGCC
TACATCGATG CCGAAGTGAC CAAGGGCGAC CGCACCATCC CGTCAGGCAG CCGCATCCTC
GGTGTTGCCA AACACAGCGG CAGCCTGCTG AGCGTCTATG AGTTTCAGGA AGGCGTACTG
CGTGGTTCGG ACGTAGGCGC TGCGTACACC TACGTTGGCG ACCGTTCCGG CCAGTCCGGC
ACAGACTTCG AACTGCCGGC TTACCAGACC GTGGACCTGT TGGCCCACTA CAAAGCCAGC
GACAACGTCA CCGTTGGCCT GAACCTGAAC AATATCTTCG ACGAAAAATA CTACGAGCGC
TCCTACAGCA ACTACTGGGT CGCACCCGGC GAACCACGCA ACTTCACGGT CAGCCTGACA
CTCAGCCTTT GA
|
|---|
| Protein sequence | MSSRRIASLA GLAIGVLGSN SYAQEQPQTI ELGSVNVTSD YQYETATSPV QGYRATRSAT
ATKTNSAIRD IPQSISVVPA SVLKDLGSNS VERALDFAGG VSKQNNFGGL TLYEYSIRGF
TTSEFYKDGF SANRGYPTTP DAANIERIEV LKGPAASLYG RGDPGGTVNI VTKKPQREAF
TTLQTSAGSW DRYRTALDVN TPLDEQGNLL SRVNLAVEDN NSFRDHVESK RVFVAPSFSW
QLNPDTSLLV ETEFVRHTST FDRGVVAPNN KWSGVSRSTF LGEPDDDIDN DNNMVQFALD
HQLNDVWSLR LASHYKQGEM SGFASESRPL NADGRTVNRR YRERDNNWHD SITQLELRGR
FDGLGVEHEV LIGTEYENYR KNERVTTIAG SPYAIDIYNP VYGQPKPNGA RSGTDFYEHI
ESRALNLQDQ IVFTDKLRGM VGTRIEHFDQ QVDDFTTNAT SGQRHDAFTQ RAGLLYQLTP
QVGLFANAST SFKPNNGLDA AGKTFDPEEG VGYEVGIKSE LFDDRLSTTL AAFHIEKENV
LALDPGTDTN RAVGKARSQG FDLQFTGQVT DAVRIIGAFA YIDAEVTKGD RTIPSGSRIL
GVAKHSGSLL SVYEFQEGVL RGSDVGAAYT YVGDRSGQSG TDFELPAYQT VDLLAHYKAS
DNVTVGLNLN NIFDEKYYER SYSNYWVAPG EPRNFTVSLT LSL
|
|---|
| |