| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2440 |
|---|
| Symbol | |
|---|
| ID | 1184092 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 2693952 |
|---|
| End bp | 2695139 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637393815 |
|---|
| Product | acyl-CoA dehydrogenase family protein |
|---|
| Protein accession | NP_792254 |
|---|
| Protein GI | 28869635 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0806323 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACAC CTTTGCAACG ACCCTTAGCA GATTCAACCG GGCTGATCGA AAACGATGCC
CACGCCTTGG CTGTCGCTAC GGCTCTGGCC CAAGAGTTCA GTATTGATGC TGCGCTACGG
GATCGCGAAA GGCAGATTCC ATATTCTGAA CTCGATGCGG TTTCCCGATC CGGGATCCTG
GGCATTTCCA TACCCCTCGC TTTCGGCGGC GCAGAGGTCA ACAACGTAAT CCTGGCAAAG
GTCATCGCCC AGATTGCCCA AGCCGACGGC TCACTGGGGC AAATTTTGCA GAACCACTTT
CATACCTTGG AGGCGTTGCG CGTCTACGGT AGTCGGGCTC AGCAACAGCG GATATTCGCT
GAGGTTCTGG CCGGTGCACT TTTCGGCGTT GCGGTGGACG AACAAGGCAC CACGAACTCA
CAAATCTGCA CTGCGGTTTT GGCCCCCAGC GGTGAAGGCT ATCGCATTAG CGGTCGCAAG
TTCTGCGCCA CGTGCGCCCC TTATACCAGG CAGATTCTTG CGTCGGCAGT GGATGCGCAA
GGCGCGCGGT ATATGGTGTT CATAAGTCTT GATGCTTTAG GCCTGAGTAT CGTCGATGAC
GGCTCTTGCT TTGGTCAGCG CACCGTCGGC GGCGGATCAG TGATGTTCGA CAATGTTTAT
GTGACATCAA GTGATGTCGT ACCTTTTCAG GTATCGCTAA ATGACCCGAA CTGCGTTGAA
CGGCACGCGC AGTTCATGCA TGCCGCTGTA GGCACCGGTA TCGCTCGCGC GGCCTATGAA
GACACCCTGC GCTTCGTTCG GGAGCACGCG CGGCCTTGGC CAGAAGCCGC CGTCGATAAA
GCCCGCGATG ATCCTCTGAC AATAATCGAG ATCGGTCGGC TGATAATTCG TTTACATGCT
GCCGAGGCGC TGCTTGAGCG CGCTGGCGCC GCCGTTGATC TAAATAGAAA GGCTGTCTGT
GCCGAAAACG TCGCTCTGGC CTCTATGGTC GTGGCGGCAG CGCAAACCCT GAGCACTGAG
GTATCTCTGG CTGCTGGCAG CAAGCTGATC GAGCTTGGAG GTGCGCGCGC CACCCTCAGC
GACTACGGAC TGGATCGACA CTGGCGCAAT GCCAGGGTAC ATACGTTATA CGATCCGGCG
CGCTGGGGGC CACACCAGCA AGGGCAACAG AAGCTGGCGC CGTTCTAA
|
|---|
| Protein sequence | MNTPLQRPLA DSTGLIENDA HALAVATALA QEFSIDAALR DRERQIPYSE LDAVSRSGIL
GISIPLAFGG AEVNNVILAK VIAQIAQADG SLGQILQNHF HTLEALRVYG SRAQQQRIFA
EVLAGALFGV AVDEQGTTNS QICTAVLAPS GEGYRISGRK FCATCAPYTR QILASAVDAQ
GARYMVFISL DALGLSIVDD GSCFGQRTVG GGSVMFDNVY VTSSDVVPFQ VSLNDPNCVE
RHAQFMHAAV GTGIARAAYE DTLRFVREHA RPWPEAAVDK ARDDPLTIIE IGRLIIRLHA
AEALLERAGA AVDLNRKAVC AENVALASMV VAAAQTLSTE VSLAAGSKLI ELGGARATLS
DYGLDRHWRN ARVHTLYDPA RWGPHQQGQQ KLAPF
|
|---|
| |