Gene PSPTO_2423 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2423 
Symbol 
ID1184075 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp2673558 
End bp2674532 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content60% 
IMG OID637393798 
ProductABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family 
Protein accessionNP_792237 
Protein GI28869618 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 
TIGRFAM ID[TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCAGAC CGATAAAAAA CACCTCACCC GGCTACCGTC GCCCGCTGCT GGCAGGATTG 
TTTGCGGCGC TGGCTCTGTG CATCGCCCTC CCCGTCGAGG CTCAGGAAAC GCTACGGATC
GGCTACCAGA AATCATCGAC ACTGATCACC CTGCTGAAAA CCCAGGGCAC TCTGGAAAAA
GCCCTTGCGC CCCAGCACGT CAACGTCACC TGGCATGAGT TCCCGAGCGG CTTGCCGCTG
CTGGAAGCGT TGAACGTGGG CAATGTCGAC ATCAGCGCGG ACGTGGCCGA CACCGTGCCG
ATTTTTGCTC AGGCGGCGCA GGCCAGGCTG ACGTACTTTG CACAGGAAGC AGCCTCGCCT
TCGGCCCAGG CGATCATCGT TCACAAAGAC TCGGCCGTGC AGCAACTGTC TGACCTCAAG
GGCAAAAAAG TCGCCGTAAC CAAGGCAGCG GGTTCTCACT ACCTGCTGAT CGCGGCCCTG
CAAAAAACCG GTCTGGCATT TTCAGACATT CAGCCCGCCT ACCTTTCGCC CGCCGACGGG
CGAGCCGCCT TCGAGAACCA CAAGGTTGAT GCCTGGGTGA CATGGGAACC CTTTCTGACC
AGCGCACAGC GCCAGTTGCC AACCCGTACC CTGGCGGACG GCAGCGGACT GGCCAGTTAC
AAACGTTATT ACCTGACCGG CACCGGCTAC GCCAAGGCTC ATCCGCAGGT GCTCAGCGTG
GTTTACGATC AGTTGCACAA GACCGGAAAC TGGCTCAAGG CCAACCCGAA AGACGCCGCG
CAGGTACTGA GCCCTTTGTG GGGCAATCTG GACATCGAAA CAGTCGAAAT CGCCAACAGC
CACCGCAGCT ATCAGATCCG GCCCGTGAAG CGCGACGAAC TGGGCGAACA ACAGAAGATC
GCCGACGCCT TCTTTGCAGC GGGCCTATTG CCCAAGGCAG TGGATGCGGG CGATGTCGAG
ATCTGGAAGC CCTGA
 
Protein sequence
MSRPIKNTSP GYRRPLLAGL FAALALCIAL PVEAQETLRI GYQKSSTLIT LLKTQGTLEK 
ALAPQHVNVT WHEFPSGLPL LEALNVGNVD ISADVADTVP IFAQAAQARL TYFAQEAASP
SAQAIIVHKD SAVQQLSDLK GKKVAVTKAA GSHYLLIAAL QKTGLAFSDI QPAYLSPADG
RAAFENHKVD AWVTWEPFLT SAQRQLPTRT LADGSGLASY KRYYLTGTGY AKAHPQVLSV
VYDQLHKTGN WLKANPKDAA QVLSPLWGNL DIETVEIANS HRSYQIRPVK RDELGEQQKI
ADAFFAAGLL PKAVDAGDVE IWKP