| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2421 |
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| Symbol | amdA |
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| ID | 1184073 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 2669857 |
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| End bp | 2671392 |
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| Gene Length | 1536 bp |
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| Protein Length | 511 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637393796 |
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| Product | amidase |
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| Protein accession | NP_792235 |
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| Protein GI | 28869616 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGTAA AACGCCCCAG CAAAGCCGAT TTTCTGATTG CCGCTCAGGA CCACGGGTAC
GAGTTGTCCG ACAGCCAGAT GGCGTCATTC CTGAATCTGG CTGACGAAAC CCTGAGTTCC
TACGAAGCCA TCGATGCGTT ATACGCTGCC CACGTCGCAC AGCCCACGCC GGTACGCGAG
CACAGCAAGC CGGCAGATGC CGAAAACCTG CACGGTGCCT GGTACGTAAA AACCCACATC
GTCGGTGCGC CAAACGGTCC TCTGGCGGGC AGAACGGTGG TCATCAAGGA CAACGTTTCA
GTGGCGGGCG TGCCGATGGC TAATGGTTCT TTGAGCCTTG ATGGCTACGT GCCGTCTGAA
GACGCCACGG TGGTCAAACG CCTGTTGGCC GCTGGTGCGA CGGTGGTCGG CAAGTCAGTG
TGCGAAGACC TGTGTTTCTC GGGAGCCAGC TTTACCTCGG CCAGCGGCGC GGTGAAAAAC
CCGTGGGACC TGGCCCGCAA CGCGGGCGGC TCGTCCAGCG GCAGTGCCGT GCTGGTTTCG
CTGCAAGAGG TCGACATGGC CATTGGCGGC GATCAGGGCG GTTCGATCCG TATGCCGTCG
GCGTGGAGCG GCATCGTCGG GCACAAGCCG ACGTACAGCC TGGTGCCTTA CACCGGTGCT
TTCCCGATTG AACGCACCAT CGACCATGTC GGCCCGATGG CCAACAACGT GCGCGACTGC
GCGGTGATGC TCGACGTGAT TGCCGGTGCT GACGGTCTCG ACTCAAGGCA GAAGAATCCG
CCAGCGGTCA GTTGTGTCGC GACCCTGGAT CAAGGCGTTG CCGGCCTGAA AATCGGTTTG
TTGCGCGAAG GTTTCGCCAT CCCCGGCATG TCCGAGCCGC AGGTGGATGC GCTGGTCAAA
GCTGCCGTGG CACAACTGCA AAGCCTCGGG GCCACGGTCG GCGAGGCAAG CGTGCCGTGG
CACCATGGTG TGGCGCTGGA CATGTGGAAC GTCATCGCCA CTGACGGCGC GGCGTACCAG
ATGCTGCAAG GCAATGGCTA CGGCATGAAC GTCGACGGCT ACTACGACCC AGAGATCATG
AGCTACTTCG GTGCCAAGCG TCGCGAACAC GCCAACACGC TGTCCAGCAG CGTACGCGCT
GTGGCGCTGA CCGGGCATTA CAGCCTGAAC AACCTGCACG GTGCCTACTA CGCCAAGGCG
CGCATGCTGG TGCCGGAACT CACTCGCCAA TACGACGAAG CGTTCAAGGA CTTCGACGTG
CTGGTGATGC CGACCATGCC GTTCGTGGCG ACCCCGTTGA CCGCCGCCGA TGCGCCGATT
GAAGAGTACG TGCACAGCGC GCTGAACATG CTCGCCAACA CCGCACCGTT CGACCTGACC
GGCCACCCGG CCACCTCGAT CCCGGCCGGT CTCGCCGATG GCCTGCCGGT CGCGATGATG
ATCGTCGCAC CGCGCTTTCA GGATGCTCTG GCATTGCGCG TCGCGCAGGC CTACGAGCAG
GTTCGCGGCG TGTTTCCGAG GCCGCCGCGT GTTTGA
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| Protein sequence | MSVKRPSKAD FLIAAQDHGY ELSDSQMASF LNLADETLSS YEAIDALYAA HVAQPTPVRE
HSKPADAENL HGAWYVKTHI VGAPNGPLAG RTVVIKDNVS VAGVPMANGS LSLDGYVPSE
DATVVKRLLA AGATVVGKSV CEDLCFSGAS FTSASGAVKN PWDLARNAGG SSSGSAVLVS
LQEVDMAIGG DQGGSIRMPS AWSGIVGHKP TYSLVPYTGA FPIERTIDHV GPMANNVRDC
AVMLDVIAGA DGLDSRQKNP PAVSCVATLD QGVAGLKIGL LREGFAIPGM SEPQVDALVK
AAVAQLQSLG ATVGEASVPW HHGVALDMWN VIATDGAAYQ MLQGNGYGMN VDGYYDPEIM
SYFGAKRREH ANTLSSSVRA VALTGHYSLN NLHGAYYAKA RMLVPELTRQ YDEAFKDFDV
LVMPTMPFVA TPLTAADAPI EEYVHSALNM LANTAPFDLT GHPATSIPAG LADGLPVAMM
IVAPRFQDAL ALRVAQAYEQ VRGVFPRPPR V
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