| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2415 |
|---|
| Symbol | |
|---|
| ID | 1184067 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 2663053 |
|---|
| End bp | 2663790 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637393790 |
|---|
| Product | branched-chain amino acid ABC transporter, ATP-binding protein |
|---|
| Protein accession | NP_792229 |
|---|
| Protein GI | 28869610 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4674] Uncharacterized ABC-type transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR03411] urea ABC transporter, ATP-binding protein UrtD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGGA TGTTACTGAG TGTCGAAGAC CTGACCGTGT CATTCGACGG CTTCAAGGCG
GTCGACAACC TCAATTTCTA TGTCGAGGAA AACCAGGTGC ATGTGGTGAT CGGCCCCAAT
GGCGCGGGCA AGACCACCCT GCTCGACATG ATCTGCGGCA AAACCCGCCC CAGCGCAGGC
CGGATTCGTT TCAAGGACCT GCAACTGGAA ACCATGATCG AGTACCAGAT CACCCGCGCG
GGCGTGGGGC GCAAGTTTCA AAACCCGTCG GTGTACGAAG ACCTCACCGT GCGCGAAAAC
CTTGATATTT CTTCGCCGGA CAAACGCGGC ATCTTCAACT GCCTGTTCGC CGGCAAGAAT
GCCGCGCTGA ACAGCGAGAT CGAACAAACC GCCGAGATGA TCTTCCTCAA GGACCAGTTG
GGGCGCAAGG CCGGGCTGCT GTCCCACGGC CAGAAACAGT GGCTGGAGAT CGGCATGCTG
CTGATGCAGC GCCCGGAATT ACTGTTGCTG GACGAACCGG TGGCCGGCAT GAGCGCGGGC
GAACGGGAGA AAACCGCCGG GCTGCTCAAA CTCATCGCCA AAGGTCGGGC CATGGTGATT
ATCGAGCACG ACATGGAGTT CGTGAAATCG GTGGCCGACA AAGTCACCGT CCTGCATCAG
GGCAAGACCC TGGCCTACGG CTCGATGGAT CAGGTGCAGA AAGATCCTCG CGTCATCGAC
GTCTATCTGG GGCACTGA
|
|---|
| Protein sequence | MSGMLLSVED LTVSFDGFKA VDNLNFYVEE NQVHVVIGPN GAGKTTLLDM ICGKTRPSAG
RIRFKDLQLE TMIEYQITRA GVGRKFQNPS VYEDLTVREN LDISSPDKRG IFNCLFAGKN
AALNSEIEQT AEMIFLKDQL GRKAGLLSHG QKQWLEIGML LMQRPELLLL DEPVAGMSAG
EREKTAGLLK LIAKGRAMVI IEHDMEFVKS VADKVTVLHQ GKTLAYGSMD QVQKDPRVID
VYLGH
|
|---|
| |