| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2369 |
|---|
| Symbol | rbsC-1 |
|---|
| ID | 1184020 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 2620817 |
|---|
| End bp | 2621809 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637393745 |
|---|
| Product | ribose ABC transporter, permease protein |
|---|
| Protein accession | NP_792185 |
|---|
| Protein GI | 28869566 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATA CTCCTTCCCC GACACTGACC GTGCCGGCCC GTCGTGGCGG TAACTATTTT
GGTCTCGGCA CCTACATCGG GCTGGCGGGC GCGTTGCTGG TCATGGTTGT GCTGTTTTCG
CTGCTCAGCG ATCACTTTCT GTCCTACCAG ACGTTCAGCA TGCTGGCCAA CCAGATTCCT
GACCTGATGG TGCTGTCGGT CGGCATGACG CTGATCCTCA TCATCGGGGG GATCGACCTG
TCGGTGGGGT CGGTACTGGC ACTGGCGGCC TCGGCGGTGA GCGTGGCCAT TCTGGGTTGG
GGCTGGAGCG TGTTTCCTGC CGCCTTGCTC GGCATCGCCT GTGCGACCCT GGCCGGTACG
ATCACCGGCT CCATTACCGT GGCGTGGCGC ATCCCCTCGT TCATCGTGTC TCTCGGCGTG
CTGGAAATGG CCCGTGGCGC GGCATACCAG ATGACCAATT CGCGCACGGC CTACATTGGC
GACTCCTTTG CCTGGCTGTC CGACCCGATT GCGTTCGGCA TTGCGCCGTC GTTCATCATC
GCGCTGCTGG TCATCTTCGT TGCCCAGGCC GTGCTGACCC GTACCGTCTT TGGCCGCTAC
CTGATCGGCA TCGGCACCAA TGAAGAAGCC GTGCGTCTGG CCGGTATCAA CCCCAAGCCC
TACAAGATTC TGGTGTTCTC GTTGATGGGG CTGCTGGCCG GCGTGGCGGC GCTGTTTCAG
ATCTCGCGAC TGGAAGCGGC TGATCCGAAT GCCGGTGCCG GGCTCGAGCT GCAGGTGATT
GCCGCAGTGG TGATTGGCGG CACCAGCCTG ATGGGCGGGC GCGGCTCGAT CATCAGTACC
TTTTTTGGTG TGCTGATCAT TTCGGTGCTG GCCGCAGGCC TGGCGCAAAT CGGTGCTACC
GAGCCGACCA AGCGCATCAT CACCGGTGCG GTGATCGTCA TTGCGGTGGT GCTGGACACC
TATCGCAGCC ACCGGGCACG GCGCCAGGGC TGA
|
|---|
| Protein sequence | MKNTPSPTLT VPARRGGNYF GLGTYIGLAG ALLVMVVLFS LLSDHFLSYQ TFSMLANQIP
DLMVLSVGMT LILIIGGIDL SVGSVLALAA SAVSVAILGW GWSVFPAALL GIACATLAGT
ITGSITVAWR IPSFIVSLGV LEMARGAAYQ MTNSRTAYIG DSFAWLSDPI AFGIAPSFII
ALLVIFVAQA VLTRTVFGRY LIGIGTNEEA VRLAGINPKP YKILVFSLMG LLAGVAALFQ
ISRLEAADPN AGAGLELQVI AAVVIGGTSL MGGRGSIIST FFGVLIISVL AAGLAQIGAT
EPTKRIITGA VIVIAVVLDT YRSHRARRQG
|
|---|
| |