| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2342 |
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| Symbol | pcaC-1 |
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| ID | 1183993 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 2595830 |
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| End bp | 2596228 |
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| Gene Length | 399 bp |
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| Protein Length | 132 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637393719 |
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| Product | 4-carboxymuconolactone decarboxylase |
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| Protein accession | NP_792159 |
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| Protein GI | 28869540 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0599] Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit |
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| TIGRFAM ID | [TIGR02425] 4-carboxymuconolactone decarboxylase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACCGAAG ACGAACGTTA CGAAGCTGGC ATGCAGGTGC GCCGCGCTGT GCTGGGCGAC
ACACATGTCG ATAACAGCCT GAGCAAACTG ACGCCCTTCA ACGAAGAATT TCAGGAAATG
ATCACCCGGC ACGCCTGGGG TGATATCTGG ACCCGCCCAG GCTTGCCCCG CCACACACGC
AGCCTGATCA CCATCGCCAT GCTGATCGGC ATGAATCGTG AGGGCGAATT GCGTCTGCAC
CTCAAAGCTG CAAAAAACAA CGGCGTGACC CGCGAAGAAA TCAAGGAAGT GCTGATGCAG
AGCGCGATCT ACTGCGGCAT TCCGGCGGCC AACGCGACGT TTCACCTCGC CGAAGCGGTG
TGGGACGAGA TGGGTGTTGA GTCGTTGAAG GAGGAATGA
|
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| Protein sequence | MTEDERYEAG MQVRRAVLGD THVDNSLSKL TPFNEEFQEM ITRHAWGDIW TRPGLPRHTR
SLITIAMLIG MNREGELRLH LKAAKNNGVT REEIKEVLMQ SAIYCGIPAA NATFHLAEAV
WDEMGVESLK EE
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