Gene PSPTO_2314 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2314 
SymboldacB 
ID1183965 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp2563001 
End bp2564467 
Gene Length1467 bp 
Protein Length488 aa 
Translation table11 
GC content61% 
IMG OID637393693 
ProductD-alanyl-D-alanine carboxypeptidase 
Protein accessionNP_792133 
Protein GI28869514 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) 
TIGRFAM ID[TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.555848 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCAAAT CGCTCCGTCC ATTGTTGCTC GCCTCGATGC TTCTGCCACT GGCTCTGCCC 
TCCTACGCCG CCGTCATCAA CACCACGCTG CCCCCAAAGG TTCAGCAGGC CCTGAAAGCC
AGCAAGCTTG GCGATGATGC GCTCTCGCTG GTCATGTTGC CGCTCAATGG TCCCGGCACA
CCCACCGTGT TCAACGCCGA TGTGTCGGTG AACCCGGCGT CGACCATGAA GCTCATCACC
ACCTACGCCG CGCTGGAAAT GCTCGGCCCG ACCCATCAGT GGAAAACCGA ATTCTTCACC
GACGGCACCC TGAGCAACGG CGTGCTGCGC GGCAACCTTT ACCTCAAGGG GGGCGGCGAC
CCCAAGCTGA ACATGGAAAA GCTCTGGCTG CTGATGCGTG ACCTGCGCGC CAATGGCGTG
CAGCAGGTGA CCGGCGACCT GGTGCTGGAC CGCAGCCATT TCGTGCAGCC GCAATTGCCT
GAGTTCAATG ACGACGGCAA CGATGAAAAC AAGCCGTTTC TGGTCAAACC CGACGCATTG
ATGGTCAACC TCAAGGCGTT GCGCTTTGTG ACGCGCAACG ATGACGGCAG AATCCTCGTG
TCTGTGGAGC CGCCAATTGC CACCATTCGT GTCGATAACC AGGTCAAGGC CATTGCCTCG
AAACAATGCA CGGGCGATGT GCGTTACAAC CCGGTGACTC AGGCTGACGG CAGCGTCATT
GTGACCGTGA CTGGCCAGTT GGGCAACGGC TGCAACTCCC AGACCTACCT GTCGCTGCTC
GACCACCCGA CCTACGCCGC AGGCGCGGTG CGGGCCATCT GGCAGGAACT GGGCGGCACC
ATTCTGGGCA AGGATCGCGT CGGCGTCGTG CCGACCAACA CCAAGCTGCT GGCCAAGGCG
TTCTCCCCGG ACCTGGTCGA AGTCATTCGC GATATCAACA AATTCAGTAA CAACACCATG
GCCCAGCAGC TGTTCCTGAG CCTGGGCGAA GAATTCCGCA ACGAAGCCGA TGGTGACGAC
GGCAAGGCCG CGCAGCGGGT GATTCGCCAG TGGCTGGCGA AAAAAGGCAT TACCGCGCCG
CATCTGGTCA TGGAGAACGG CTCGGGTCTT TCGCGTGCGG AGCGGGTCAG TGCCCGCGAG
ATGGCGATTA TCCTGCAGGC CGCCTGGCGC AGCCCGTATG CCGCCGAATT CATGAGTTCG
ATGCCGCTGG CAGGGCTTGA CGGCACCATG CGCAAACGCC TCAAGCGTAC GCCGCTACTG
GGCGAGGCCC ACATCAAGAC CGGCACCCTG AACACCGTTC GCGCGATTGC CGGTTTCAGC
CGCGACAGCA ATGGCAACAC CTGGGCAGTC GTGGCGATCC TCAACGATCC GCGTCCGTTC
GGGGCGTCTT CGATTCTGGA TGAGGTGCTG ATCGACCTGT ATCGCCAGCC CAAGCTGGCC
AACACCACGG TCTCGATCCA GCAGTAG
 
Protein sequence
MIKSLRPLLL ASMLLPLALP SYAAVINTTL PPKVQQALKA SKLGDDALSL VMLPLNGPGT 
PTVFNADVSV NPASTMKLIT TYAALEMLGP THQWKTEFFT DGTLSNGVLR GNLYLKGGGD
PKLNMEKLWL LMRDLRANGV QQVTGDLVLD RSHFVQPQLP EFNDDGNDEN KPFLVKPDAL
MVNLKALRFV TRNDDGRILV SVEPPIATIR VDNQVKAIAS KQCTGDVRYN PVTQADGSVI
VTVTGQLGNG CNSQTYLSLL DHPTYAAGAV RAIWQELGGT ILGKDRVGVV PTNTKLLAKA
FSPDLVEVIR DINKFSNNTM AQQLFLSLGE EFRNEADGDD GKAAQRVIRQ WLAKKGITAP
HLVMENGSGL SRAERVSARE MAIILQAAWR SPYAAEFMSS MPLAGLDGTM RKRLKRTPLL
GEAHIKTGTL NTVRAIAGFS RDSNGNTWAV VAILNDPRPF GASSILDEVL IDLYRQPKLA
NTTVSIQQ