Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2314 |
Symbol | dacB |
ID | 1183965 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 2563001 |
End bp | 2564467 |
Gene Length | 1467 bp |
Protein Length | 488 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637393693 |
Product | D-alanyl-D-alanine carboxypeptidase |
Protein accession | NP_792133 |
Protein GI | 28869514 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.555848 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCAAAT CGCTCCGTCC ATTGTTGCTC GCCTCGATGC TTCTGCCACT GGCTCTGCCC TCCTACGCCG CCGTCATCAA CACCACGCTG CCCCCAAAGG TTCAGCAGGC CCTGAAAGCC AGCAAGCTTG GCGATGATGC GCTCTCGCTG GTCATGTTGC CGCTCAATGG TCCCGGCACA CCCACCGTGT TCAACGCCGA TGTGTCGGTG AACCCGGCGT CGACCATGAA GCTCATCACC ACCTACGCCG CGCTGGAAAT GCTCGGCCCG ACCCATCAGT GGAAAACCGA ATTCTTCACC GACGGCACCC TGAGCAACGG CGTGCTGCGC GGCAACCTTT ACCTCAAGGG GGGCGGCGAC CCCAAGCTGA ACATGGAAAA GCTCTGGCTG CTGATGCGTG ACCTGCGCGC CAATGGCGTG CAGCAGGTGA CCGGCGACCT GGTGCTGGAC CGCAGCCATT TCGTGCAGCC GCAATTGCCT GAGTTCAATG ACGACGGCAA CGATGAAAAC AAGCCGTTTC TGGTCAAACC CGACGCATTG ATGGTCAACC TCAAGGCGTT GCGCTTTGTG ACGCGCAACG ATGACGGCAG AATCCTCGTG TCTGTGGAGC CGCCAATTGC CACCATTCGT GTCGATAACC AGGTCAAGGC CATTGCCTCG AAACAATGCA CGGGCGATGT GCGTTACAAC CCGGTGACTC AGGCTGACGG CAGCGTCATT GTGACCGTGA CTGGCCAGTT GGGCAACGGC TGCAACTCCC AGACCTACCT GTCGCTGCTC GACCACCCGA CCTACGCCGC AGGCGCGGTG CGGGCCATCT GGCAGGAACT GGGCGGCACC ATTCTGGGCA AGGATCGCGT CGGCGTCGTG CCGACCAACA CCAAGCTGCT GGCCAAGGCG TTCTCCCCGG ACCTGGTCGA AGTCATTCGC GATATCAACA AATTCAGTAA CAACACCATG GCCCAGCAGC TGTTCCTGAG CCTGGGCGAA GAATTCCGCA ACGAAGCCGA TGGTGACGAC GGCAAGGCCG CGCAGCGGGT GATTCGCCAG TGGCTGGCGA AAAAAGGCAT TACCGCGCCG CATCTGGTCA TGGAGAACGG CTCGGGTCTT TCGCGTGCGG AGCGGGTCAG TGCCCGCGAG ATGGCGATTA TCCTGCAGGC CGCCTGGCGC AGCCCGTATG CCGCCGAATT CATGAGTTCG ATGCCGCTGG CAGGGCTTGA CGGCACCATG CGCAAACGCC TCAAGCGTAC GCCGCTACTG GGCGAGGCCC ACATCAAGAC CGGCACCCTG AACACCGTTC GCGCGATTGC CGGTTTCAGC CGCGACAGCA ATGGCAACAC CTGGGCAGTC GTGGCGATCC TCAACGATCC GCGTCCGTTC GGGGCGTCTT CGATTCTGGA TGAGGTGCTG ATCGACCTGT ATCGCCAGCC CAAGCTGGCC AACACCACGG TCTCGATCCA GCAGTAG
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Protein sequence | MIKSLRPLLL ASMLLPLALP SYAAVINTTL PPKVQQALKA SKLGDDALSL VMLPLNGPGT PTVFNADVSV NPASTMKLIT TYAALEMLGP THQWKTEFFT DGTLSNGVLR GNLYLKGGGD PKLNMEKLWL LMRDLRANGV QQVTGDLVLD RSHFVQPQLP EFNDDGNDEN KPFLVKPDAL MVNLKALRFV TRNDDGRILV SVEPPIATIR VDNQVKAIAS KQCTGDVRYN PVTQADGSVI VTVTGQLGNG CNSQTYLSLL DHPTYAAGAV RAIWQELGGT ILGKDRVGVV PTNTKLLAKA FSPDLVEVIR DINKFSNNTM AQQLFLSLGE EFRNEADGDD GKAAQRVIRQ WLAKKGITAP HLVMENGSGL SRAERVSARE MAIILQAAWR SPYAAEFMSS MPLAGLDGTM RKRLKRTPLL GEAHIKTGTL NTVRAIAGFS RDSNGNTWAV VAILNDPRPF GASSILDEVL IDLYRQPKLA NTTVSIQQ
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