| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2299 |
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| Symbol | oprF |
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| ID | 1183950 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 2542838 |
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| End bp | 2543872 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637393678 |
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| Product | outer membrane porin OprF |
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| Protein accession | NP_792118 |
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| Protein GI | 28869499 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins
[COG3047] Outer membrane protein W |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000300566 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAACTGA AAAACACCTT GGGCTTGGCC ATTGGTACTA TTGTTGCCGC AACTTCGTTC
GGCGCGCTGG CTCAAGGCCA AGGCGCAGTC GAAATCGAAG GCTTCGCCAA GAAAGAAATG
TACGACAGCG CCCGTGACTT CAAAAACAAC GGCAACCTGT TCGGCGGCTC GATTGGCTAC
TTCCTGACCG ACGACGTTGA ATTGCGTCTG GGCTACGACG AAGTTCACAA CGTTCGTAGC
GATGATGGCA AGAACATCAA GGGCGCAAAC ACCGCTCTGG ACGCTCTGTA CCACTTCAAC
AACCCAGGCG ACATGCTGCG TCCATACGTT TCTGCCGGTT TCTCCGATCA GAGCATTGGC
CAGAACGGTC GCAACGGTCG TAACGGTTCC ACCTTCGCCA ACATCGGCGG CGGTGCCAAG
CTGTACTTCA CCGACAATTT CTATGCTCGT GCTGGCGTTG AAGCTCAGTA CAACATCGAC
CAAGGCGACA CCGAGTGGGC TCCAAGCGTC GGTATCGGCG TAAACTTCGG TGGCGGCAGC
AAGAAAGTTG AAGCAGCACC AGCTCCAGTA GCTGAAGTGT GCTCCGACAG CGACAACGAC
GGCGTGTGCG ACAACGTCGA CAAGTGCCCA GACACCCCAG CCAACGTAAC TGTTGACGCT
GATGGCTGCC CGGCAGTTGC TGAAGTGGTT CGTGTTGAGC TGGACGTGAA GTTCGACTTC
AACAAGTCTG TTGTCAAGCC TAACAGCATG GGCGACATCA AGAACCTCGC TGACTTCATG
CAGCAGTACC CACAGACCAC CACCACTGTT GAAGGTCACA CTGACTCCGT CGGTCCTGAC
GCTTACAACC AAAAACTGTC CGAGCGTCGT GCAAACGCCG TTAAACAGGT TCTGGTTAAC
CAGTACGGTG TTGGCGCTAG CCGCGTAAAC TCGGTTGGTT ACGGCGAATC CCGCCCAGTT
GCTGACAACG CAACTGACGC TGGCCGTGCA GTAAACCGTC GCGTAGAAGC AGAAGTAGAA
GCTCAAGCTA AGTAA
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| Protein sequence | MKLKNTLGLA IGTIVAATSF GALAQGQGAV EIEGFAKKEM YDSARDFKNN GNLFGGSIGY
FLTDDVELRL GYDEVHNVRS DDGKNIKGAN TALDALYHFN NPGDMLRPYV SAGFSDQSIG
QNGRNGRNGS TFANIGGGAK LYFTDNFYAR AGVEAQYNID QGDTEWAPSV GIGVNFGGGS
KKVEAAPAPV AEVCSDSDND GVCDNVDKCP DTPANVTVDA DGCPAVAEVV RVELDVKFDF
NKSVVKPNSM GDIKNLADFM QQYPQTTTTV EGHTDSVGPD AYNQKLSERR ANAVKQVLVN
QYGVGASRVN SVGYGESRPV ADNATDAGRA VNRRVEAEVE AQAK
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