Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2299 |
Symbol | oprF |
ID | 1183950 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2542838 |
End bp | 2543872 |
Gene Length | 1035 bp |
Protein Length | 344 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637393678 |
Product | outer membrane porin OprF |
Protein accession | NP_792118 |
Protein GI | 28869499 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins [COG3047] Outer membrane protein W |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000300566 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAACTGA AAAACACCTT GGGCTTGGCC ATTGGTACTA TTGTTGCCGC AACTTCGTTC GGCGCGCTGG CTCAAGGCCA AGGCGCAGTC GAAATCGAAG GCTTCGCCAA GAAAGAAATG TACGACAGCG CCCGTGACTT CAAAAACAAC GGCAACCTGT TCGGCGGCTC GATTGGCTAC TTCCTGACCG ACGACGTTGA ATTGCGTCTG GGCTACGACG AAGTTCACAA CGTTCGTAGC GATGATGGCA AGAACATCAA GGGCGCAAAC ACCGCTCTGG ACGCTCTGTA CCACTTCAAC AACCCAGGCG ACATGCTGCG TCCATACGTT TCTGCCGGTT TCTCCGATCA GAGCATTGGC CAGAACGGTC GCAACGGTCG TAACGGTTCC ACCTTCGCCA ACATCGGCGG CGGTGCCAAG CTGTACTTCA CCGACAATTT CTATGCTCGT GCTGGCGTTG AAGCTCAGTA CAACATCGAC CAAGGCGACA CCGAGTGGGC TCCAAGCGTC GGTATCGGCG TAAACTTCGG TGGCGGCAGC AAGAAAGTTG AAGCAGCACC AGCTCCAGTA GCTGAAGTGT GCTCCGACAG CGACAACGAC GGCGTGTGCG ACAACGTCGA CAAGTGCCCA GACACCCCAG CCAACGTAAC TGTTGACGCT GATGGCTGCC CGGCAGTTGC TGAAGTGGTT CGTGTTGAGC TGGACGTGAA GTTCGACTTC AACAAGTCTG TTGTCAAGCC TAACAGCATG GGCGACATCA AGAACCTCGC TGACTTCATG CAGCAGTACC CACAGACCAC CACCACTGTT GAAGGTCACA CTGACTCCGT CGGTCCTGAC GCTTACAACC AAAAACTGTC CGAGCGTCGT GCAAACGCCG TTAAACAGGT TCTGGTTAAC CAGTACGGTG TTGGCGCTAG CCGCGTAAAC TCGGTTGGTT ACGGCGAATC CCGCCCAGTT GCTGACAACG CAACTGACGC TGGCCGTGCA GTAAACCGTC GCGTAGAAGC AGAAGTAGAA GCTCAAGCTA AGTAA
|
Protein sequence | MKLKNTLGLA IGTIVAATSF GALAQGQGAV EIEGFAKKEM YDSARDFKNN GNLFGGSIGY FLTDDVELRL GYDEVHNVRS DDGKNIKGAN TALDALYHFN NPGDMLRPYV SAGFSDQSIG QNGRNGRNGS TFANIGGGAK LYFTDNFYAR AGVEAQYNID QGDTEWAPSV GIGVNFGGGS KKVEAAPAPV AEVCSDSDND GVCDNVDKCP DTPANVTVDA DGCPAVAEVV RVELDVKFDF NKSVVKPNSM GDIKNLADFM QQYPQTTTTV EGHTDSVGPD AYNQKLSERR ANAVKQVLVN QYGVGASRVN SVGYGESRPV ADNATDAGRA VNRRVEAEVE AQAK
|
| |