Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2297 |
Symbol | |
ID | 1183948 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2541234 |
End bp | 2542058 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637393676 |
Product | hypothetical protein |
Protein accession | NP_792116 |
Protein GI | 28869497 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000644862 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGAATTGA ATCTCTGGAC CCAGAGCCTT CTTGCTGCAA TGACTGCGTT GTGGGCCAAG GTTGCAAACT TCATCCCCAA CCTGTTTGGT GCCCTGGTTG TGGTGCTGCT GGGTTTTGTC GTAGCCAAGC TGCTAGACGC ACTGCTGTCC AAATTGCTGG CCAAGCTGGG CCTTGATCGT CTGGTCGGTG GCACCGGCCT GACCAAGATC ATCGGGCGGG CTGGCGTCAA GGTGCCGATT TCCACGTTGA TCGGCAAGAT CGTCTACTGG TTCGTATTGT TGATCTTCCT CGTTTCTGCA GCCGAATCGC TTGGCTTGCA GCGAGTGTCA GCTACGCTGG ACATGTTGGC GCTGTATTTG CCGAAGGTAT TTGGTGCGGC ACTGGTGTTG CTGGTCGGCG TATTGCTCGC GCAACTGGTC AATGGGCTGG TGCGCGGCGC GGCCGAAGGG GTAGGCATCG ATTATTCCGC AGGTCTTGGG CGAATTGCTC AGGGCCTGGT GATCATCATC AGTATTTCGG TTGCGATCAG CCAGCTTGAG GTCAAGACTG ACCTGCTGAA CCACGTTATT GTGATTGCAT TGATTACCGT TGGTCTGACA GTGGCGCTGG CTTTAGGCCT GGGCAGTCGT GAAATCGCCG GGCAGATCAT TGCCGGGATC TATGTTCGCG AGCTTTTTCA GGTCGGCCAG CAGGTACAGG TAGGCGATAC AGAGGGTCAG ATCGAGGAAA TCGGTACGGT CAAGACAACG CTGTTGACAG ACGAGGGGGA GCTGGTGTCG TTTTCCAACC GCATTCTCCT GGAGCAGAGA GTAATCAGCC GTTAA
|
Protein sequence | MELNLWTQSL LAAMTALWAK VANFIPNLFG ALVVVLLGFV VAKLLDALLS KLLAKLGLDR LVGGTGLTKI IGRAGVKVPI STLIGKIVYW FVLLIFLVSA AESLGLQRVS ATLDMLALYL PKVFGAALVL LVGVLLAQLV NGLVRGAAEG VGIDYSAGLG RIAQGLVIII SISVAISQLE VKTDLLNHVI VIALITVGLT VALALGLGSR EIAGQIIAGI YVRELFQVGQ QVQVGDTEGQ IEEIGTVKTT LLTDEGELVS FSNRILLEQR VISR
|
| |