| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2287 |
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| Symbol | prpB |
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| ID | 1183938 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 2528345 |
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| End bp | 2529238 |
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| Gene Length | 894 bp |
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| Protein Length | 297 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637393666 |
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| Product | methylisocitrate lyase |
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| Protein accession | NP_792106 |
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| Protein GI | 28869487 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.298126 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTCCA ACAACACTAC TCCCGGCCAG CGTTTCCGTG ATGCAGTCGC CAGCGAACAG
CCGTTGCAAG TGGTTGGCGC GATCAATGCC AACCACGCGC TGCTCGCCAG GCGCGCCGGG
TTCAAGGCTA TTTACCTGTC GGGTGGCGGG GTGGCTGCGG GTTCGCTGGG TATCCCGGAT
TTGGGGATCA CCGGTCTGGA GGATGTGCTG ATCGATGTGC GGCGCATCAC TGATGTGTGT
GATCTGCCGC TGCTGGTGGA TGTCGACACG GGGTTCGGTT CTTCGGCCTT CAACGTGGCG
CGCACCGTAC GCTCGATGAT CAAGGCGGGC GCGGCGGCGA TTCATATTGA AGATCAGGTC
GGAGCCAAGC GCTGCGGTCA TCGCCCGAAC AAGGAAATCG TTTCGCAGCA AGAAATGGTC
GACCGCATCA AGGCTGCCGT CGATGCGCGA ACCGACGACA GTTTCGTGAT CATGGCGCGC
ACCGATGCGC TGGCGGTCGA AGGGCTGGAG TCGGCGCTGG AACGTGCTGC GGCGTGTATT
GAAGCGGGCG CAGACATGGT CTTTCCGGAA GCGATCACCG AACTGGCGAT GTACAAGCAA
TTTGCCAACC GGGCGGGCGT ACCGATCCTC GCCAACATCA CCGAATTCGG TGCCACGCCG
CTGTTTACTG TTGATGAATT GCGCGAGGCG GATGTGTCGC TGGTGCTTTA TCCGCTTTCA
GCCTTCCGCG CCATGAACAA GGCGGCGGAG AACGTCTACG GCGCGATCCG CCGCGACGGC
AGCCAGAAAA ACGTGATCGA CAGCATGCAG ACCCGCATGG AGCTGTACGA CGCCATCGAT
TACCACACCT TCGAAAAGAA ACTGGATGCG TTGTTTGCGC AGAAGAAGGG CTGA
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| Protein sequence | MSSNNTTPGQ RFRDAVASEQ PLQVVGAINA NHALLARRAG FKAIYLSGGG VAAGSLGIPD
LGITGLEDVL IDVRRITDVC DLPLLVDVDT GFGSSAFNVA RTVRSMIKAG AAAIHIEDQV
GAKRCGHRPN KEIVSQQEMV DRIKAAVDAR TDDSFVIMAR TDALAVEGLE SALERAAACI
EAGADMVFPE AITELAMYKQ FANRAGVPIL ANITEFGATP LFTVDELREA DVSLVLYPLS
AFRAMNKAAE NVYGAIRRDG SQKNVIDSMQ TRMELYDAID YHTFEKKLDA LFAQKKG
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