| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2266 |
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| Symbol | |
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| ID | 1183917 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 2509214 |
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| End bp | 2511730 |
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| Gene Length | 2517 bp |
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| Protein Length | 838 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637393645 |
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| Product | permease, putative |
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| Protein accession | NP_792085 |
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| Protein GI | 28869466 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.145107 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACGTT TGCCTTTTGC CCGTCTGCTG AGCCTTGCCA CACGCCAACT GTTGCGCGAT
GCCCGCGCCG GTGAATTACG TGTTTTATTC TTTGCATTGC TGGTGGCCGT GGCTGCCAGC
ACCGCTATCG GCTACTTCGG TGCGCGCCTG AACGGCGCGA TGCTGTTGCG GGCGACCGAG
TTTCTCGGCG CTGATCTGGT TGTCGAAGGC TCAAGCCCGG CACGCGCAGA GCAGATTGAA
GAAGGCACAC GCCTGCAGCT CAAGCATGCG CAGATTGTGG TCTTTTCCAG TGTGATCGCC
ACCGATGCCG GGATCCAGCT GTCGAGCATC AAGGCCGTGG ATGATGCCTA CCCGTTACGC
GGCGAACTGA AAAGCGCACC GGACCTGTAT CAGACCGAGC AGGCCGGCAG CGGCCCGAAA
CCCGGTGAAG CCTGGGCCGA GGCGCGGCTG TTTCCTGCGG TGGACTTGAA GATTGGCGAC
GACATCGACG TTGGCGCCAA GACCTTGAAA CTGACCCGCG TGCTGACCTA CGAGCCGGAC
CGCGCCGGCA ACTTCTACAG CCTCACCCCA CGGGTGATGA TCAACCTGCA GGATCTGGCC
GCCACCGGTG TGGTGCAGCC GGGCAGCCGG GTCAGCTACC GGGAAATGTG GAGCGGCCCG
CCAGAGGCGC TGGCCACCTA CCGCAAGGCC ATCGAACCAG GCCTTGAACC GCACCAGGAA
ATAAAAGACG CCCGCGACGG CAGCCAGCAG ATTGGTGGCG CACTGGGCAA AGCCGAACGC
TACCTGAATA TGGCGAGCCT GGTCGCAGTG CTGCTGGCAG GCGTCGCTGT TGCACTGTCG
GCGTCCCGAT TCGCTGCACG GCGTTTCGAT GCCAGCGCCC TGCTCCGCTG CCTGGGCCTG
TCGCGCGGCG AAACCATGAC ATTGTTCAGC CTGCAACTGG CGATCATCGG CCTGCTGGCC
AGCCTGAGCG GCGCACTGCT CGGCTGGCTG GCACAATTGG GGCTGTTCGC CCTGTTGCAA
AACCTGCTGC CGGCCAGCGT GCCACCGGGA GGCCTCTTGC CTGCGCTGGC AGGCATGGGC
ACCGGGCTGG TGGCGCTGGC CGGTTTCGCC CTGCCGCCAC TCGCGGCATT GGGCCGCGTG
CCGCCTTTAC GCGTTTTGCG CCGGGACATG CTGCCGATTC CCGCCAGTTC ATGGCTGGTG
TATGGCGCGG CGCTGCTCGC GCTGGGCCTG ATCATGTGGC GCCTGAGCCT GGACCTGGTG
CTGACATTCG CCCTGCTGGG CGGTGGCGTG GTCGCTGCGC TGATACTGGG CAGCCTGTTG
CTGCTGGCAC TCAACAGCCT GCGCCGCTTG CTGGCCGGGG CGTCGCTGCC GTGGCGACTG
GGTCTGGGGC AACTGCTGCG TTACCCGCTG GCCGCTGCCG GTCAGTCGCT GGCCTTCGGG
CTGATCCTGC TGTCGATGGG CTTGATCGCG CTGCTGCGTG GCGAGTTGCT CGACACCTGG
CAGAACCAGC TGCCCAAGGA TGCGCCAAAC TACTTCGTGC TCAATGTGCT GCCCGCCGAC
AAGGACAACT TCGCCCAGAC GCTGAGCAAG CTGTCCACCC ACTCTGCCCC GCTGTATCCG
GTGGTACCGG GACGCCTGAC CAGCATCAAT GGCGAACCGG TGAGCAGTTT CGTCACCAAG
GACTCGCGTG GCGAGAACGC CACACGCCGG GACCTGAGCC TGACCTGGGC TGCCGACTTG
CCCGAGGGCA ATACCCTGAC CGCTGGCACC TGGTGGAAAG ACCTGCCCGC TGACGGCCAG
AACAACGTGA CGCCTGGTGT GTCGATTGAG GCCAAACTGG CCGACAGCCT GCAGATCAAA
CTGGGCGACC GTTTGAGCTT CATCGTCGGC GGACTTACCC GCGAGGCGCA GGTCACCAGC
TTGAGGGAGG TGAACTGGGA CACCTTCCAG CCCAACTTCT TCATGATCTT CCAGCCAGGC
ACACTGGCCG ATTTGCCGAC CACTTACCTG ACCAGCTTCT ATCTGCCTCC CGGCCAGGAC
AAGCAGATTG TCGAGCTGTC ACGGGCCTAC CCGTCAATCA GCATTCTGGG TGTCGAGGCG
CTGCTGGCGC AGGTGCGCAG CATTCTCGAT CAAGTCACCC TCGCTGTGCA GTTCGTGCTG
CTGTTTGTGC TGGCGGCAGG TATTGCCGTG CTGTTTTCAG GGTTGCAGGC GACCCTGGAT
GAACGAATAC GTCAGGGCGC GCTGCTGCGG GCGCTGGGCG CAAGACGGGC ATTGCTGATC
AAGTCGCGAC GCATCGAATT CGGCTTGCTG GGTGCTGCCA GTGGCGTGCT GGCTGCGCTG
GGTTGCGAGC TGGTGAGCTT CGTGTTGTAC CGCTACGCCT TTTCCCTGGA ATGGCAACCG
CACCCCTGGT TGCTGCTGTT GCCGGTGATC GGCGCGCTGC TGGTCGGCGG CGCCGGCGTA
TTCGGTACTC GACGCGCGCT GAACGTCAGC CCGCTGACCG TGCTGCGCGA GGGTTGA
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| Protein sequence | MARLPFARLL SLATRQLLRD ARAGELRVLF FALLVAVAAS TAIGYFGARL NGAMLLRATE
FLGADLVVEG SSPARAEQIE EGTRLQLKHA QIVVFSSVIA TDAGIQLSSI KAVDDAYPLR
GELKSAPDLY QTEQAGSGPK PGEAWAEARL FPAVDLKIGD DIDVGAKTLK LTRVLTYEPD
RAGNFYSLTP RVMINLQDLA ATGVVQPGSR VSYREMWSGP PEALATYRKA IEPGLEPHQE
IKDARDGSQQ IGGALGKAER YLNMASLVAV LLAGVAVALS ASRFAARRFD ASALLRCLGL
SRGETMTLFS LQLAIIGLLA SLSGALLGWL AQLGLFALLQ NLLPASVPPG GLLPALAGMG
TGLVALAGFA LPPLAALGRV PPLRVLRRDM LPIPASSWLV YGAALLALGL IMWRLSLDLV
LTFALLGGGV VAALILGSLL LLALNSLRRL LAGASLPWRL GLGQLLRYPL AAAGQSLAFG
LILLSMGLIA LLRGELLDTW QNQLPKDAPN YFVLNVLPAD KDNFAQTLSK LSTHSAPLYP
VVPGRLTSIN GEPVSSFVTK DSRGENATRR DLSLTWAADL PEGNTLTAGT WWKDLPADGQ
NNVTPGVSIE AKLADSLQIK LGDRLSFIVG GLTREAQVTS LREVNWDTFQ PNFFMIFQPG
TLADLPTTYL TSFYLPPGQD KQIVELSRAY PSISILGVEA LLAQVRSILD QVTLAVQFVL
LFVLAAGIAV LFSGLQATLD ERIRQGALLR ALGARRALLI KSRRIEFGLL GAASGVLAAL
GCELVSFVLY RYAFSLEWQP HPWLLLLPVI GALLVGGAGV FGTRRALNVS PLTVLREG
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