| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2259 |
|---|
| Symbol | |
|---|
| ID | 1183910 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 2501881 |
|---|
| End bp | 2504172 |
|---|
| Gene Length | 2292 bp |
|---|
| Protein Length | 763 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637393638 |
|---|
| Product | sigma-54 dependent transcriptional regulator |
|---|
| Protein accession | NP_792078 |
|---|
| Protein GI | 28869459 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.908034 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGTGATC GTGAGCTATT GCGTAGACCC TCGGAGCCCG ACGTTCTTGC TGTCGGGGCC
TCAGCTGCGT TTGTACGGGT CATTCATCAG GTTGATCAGA TCGCACCGAC AGGCCATACG
GTACTGATCA CCGGGCCGTC GGGGGCAGGA AAAGAAGTCA TCGCCCAGCG CTTGCATCGG
CTTGGGGTGA ACCCGCTCCA TCCCTTTGTG GATATCAACT GCGCTGCATT GCCAGCACAC
CTCATTGAAG CAGAGCTATT CTGTCATAGC CGAGGTGCGT TCACCGGTGC CGTCCATACC
CGTGTAGGTC ACTTTGAAGC GGCCGGTAGC GGGACGCTTT TTCTGGACGA GATCGGTGAA
TTGCCTCTTG CCTTGCAGCC TGTGCTGTTG AGGGTGCTGG AGACGCGCAG CTTTCGCCCG
CTGGGCAGCA ACCTCGTCCG GGCTTTTCAG GGAAGGATTG TTGCGGCCAC ACATCGCAAC
CTTCGTGAGA TGGTTGATCA AGGCCTGTTT CGTGAAGACC TCTATTACCG GCTGGCTGTT
TTTGAAATCG TCTTGCCAGG CCTGGATCAG CGTCCTGAAG ATGTTGTGTT GCTCGCGCAC
TATTTTGCCA GCCGGCTATC CAGACCTCTG AGCTTCACCC CGGATGCTGA CGTATTGCTC
GCCCGTCAGC GCTGGCCAGG GCATGCCCGT CAATTGCGCA CTCTGATCGA ACGCCTGAGT
GTTATGGCGG ACAGCACACT TATCAGCGCA ATTGTTTTAC AGCCCTTTCT GGAGGTGTCT
CGTTCGCAAG AACGGCTGCC GCCACCCCGC GACATCGTTG ACGACCTGAT GCGTTTACCG
GGCAAGGACA AGTTGGCTGC TGCCGAGCAG TTGCTCATTG ACCGAGCGCT TCATCTCTCC
AGCGGAAACA AAAGCGCAGC CGCCAAGTTA CTGGGGGTCG GCCGCAAGGT AATCGAACGA
CGTCTGAGAG GGCGCGAGCG CGATTTACCC GTGCAATTTG TTTTAAAGCA AGCCAGTCAG
GCAATCGCTC GGTCCGAGTT TCAGGCCACG ATTCAACTGC TTCAGGCCGC GCTGAGCCAG
CGCTACAGCC AGCCGCCCAA CCCTGTTGTG GGACGTCGGT TTTTTGAGCT AAATCGGCTT
ATGGGGGTGT GCTATCGCGG CCTTCAGGGC TGGCTGAGCC CGGATGCCCG AGCCTGTGAT
GAAGCGGCCC TGCATGCCGG AACGGATATC TGTGAGCCCG CGGAGCTTGC TGCGCTGCAG
TTCGGTGTCT GGAGCAGTCA ACTGATGGCG CTGGATTTGC AACAAGCACG CTCTACGGCT
CAGATAATGT TGCGCCGGGC GCAGGCGAGC GGCGTTCCGG AAATGCTTGA AGAGGCTCAA
ATCGCCCTCG CCAATACCCT TTACTGGCTG GGCGACAACG AGCGCTGCCT GTCCATCATT
GCTCAATCGG GGTTGAGCGC TGACGTAGCG CGCAATCGCA TTGGTCAGCA AGGCATCAAT
TTTGCCGCGC TGGCATTGAT GCTTGAGGGG TTATCCGCGT TTCACTGTGG TCTTTTCACC
CAGGCAAGGA AAGCTCTGGA TGATCTGAGA GCGCTTGGAG CCGAACGATA TTCTGCTTTC
AGTGACGCGG TCATTTTGCA GGGTGTGGTC TGGCTCGCCT GCCTTTTTGA AGAGGGGACG
ATAGTGGGCG ACTGCGTTCA AGAGCTGATA CAGGTATCGC GGGAGAACGG GTTTACCTTC
TACCTCGGTG TCGGACAGAT CTTTCAAGGT TGGCACATGG CCCAGAGATC ACCCATCGAA
GCTGGGCTGG CCACCATAGT GGAAGGTTAC GAAAAACAGA TGCTGCAACA TGGCGGGCAT
TTGTTTTATT CATTCCAGAT CTTGAAACGC GCCGAATTGC TGTTGCGAGA TGGCCGCTTC
GAGGAGTCCG AGGCGCTGGT CACTGAGGCG TTCGGCAGGA TCGATATAAC GCAAGAGAAG
GCCTATCAGA GTGATCTGAT GATCATCAGG GGGCGCTCGA TCCTTGCTCA GGGCAACGTG
CAGGAAGCCG AGCGTGCGTT GCGCAGTGCA TTGTCCATGG CGTTTGCGGT GGGGTCGGTG
TCGGCGCGAA TATCCGCAGC GACATACCTC GCCACTGTGC TCATTGCCCG GGGCCAATCG
GATCAGGCAT GCGAAATTCT GGATCATGCA GTCGGCGGCA TTTCTGCGCA TCATGCGCCC
CCCATTCTGT CTCGATCTCA CGCCCTGTTA GCCACGCTTT TGCCAACACG GATACCGGTT
TCCTATAACT GA
|
|---|
| Protein sequence | MSDRELLRRP SEPDVLAVGA SAAFVRVIHQ VDQIAPTGHT VLITGPSGAG KEVIAQRLHR
LGVNPLHPFV DINCAALPAH LIEAELFCHS RGAFTGAVHT RVGHFEAAGS GTLFLDEIGE
LPLALQPVLL RVLETRSFRP LGSNLVRAFQ GRIVAATHRN LREMVDQGLF REDLYYRLAV
FEIVLPGLDQ RPEDVVLLAH YFASRLSRPL SFTPDADVLL ARQRWPGHAR QLRTLIERLS
VMADSTLISA IVLQPFLEVS RSQERLPPPR DIVDDLMRLP GKDKLAAAEQ LLIDRALHLS
SGNKSAAAKL LGVGRKVIER RLRGRERDLP VQFVLKQASQ AIARSEFQAT IQLLQAALSQ
RYSQPPNPVV GRRFFELNRL MGVCYRGLQG WLSPDARACD EAALHAGTDI CEPAELAALQ
FGVWSSQLMA LDLQQARSTA QIMLRRAQAS GVPEMLEEAQ IALANTLYWL GDNERCLSII
AQSGLSADVA RNRIGQQGIN FAALALMLEG LSAFHCGLFT QARKALDDLR ALGAERYSAF
SDAVILQGVV WLACLFEEGT IVGDCVQELI QVSRENGFTF YLGVGQIFQG WHMAQRSPIE
AGLATIVEGY EKQMLQHGGH LFYSFQILKR AELLLRDGRF EESEALVTEA FGRIDITQEK
AYQSDLMIIR GRSILAQGNV QEAERALRSA LSMAFAVGSV SARISAATYL ATVLIARGQS
DQACEILDHA VGGISAHHAP PILSRSHALL ATLLPTRIPV SYN
|
|---|
| |