| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2226 |
|---|
| Symbol | |
|---|
| ID | 1183877 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 2452514 |
|---|
| End bp | 2454061 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637393607 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_792047 |
|---|
| Protein GI | 28869428 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0148711 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGTTC ACGAAGCAGA AGCGGACTTC AAGGATCTGA ACATGATAAC GACTCGACTG
TATGACCGTT TTCGCCACTG GCTGAGGAGG GGATTCACAG CGCTGTTCAG GCAGGATCCC
GGCTATCCAC CGCCTTTTAT TGCCTATCTT CTTCCCGACG ATCCGCAATG GGACGAAGAG
GGGTTGTTGC CCGTAGACGA TGTATTTAAT CCACTGCCGA TACAGATTCC CGCGTGGGAT
TACTACAATG AGCCCCGTTA TGACGTCATT CTTACGGTTT ACTGGGACAA CACTACATTG
GTCTATCAGA AAACCTGGCC AGGCGAAGAT TTCCCCTCAC TCCCCCTTGA AGACCTATTG
TTCGACTTGC CGGAATATCA TCTCACGGCT GGAATCCACT CGATACGCTA TGAGGTGACG
GAGTATTCGG GCAATAGCGA CTGGTCTGTG CCCCAGACTG TCACCATCGA TCTGACTGCC
CCGATGCTGG CTGCCAATCA GGGGCAACTG AGGTTTGATA CCTCAAAGAT TACCTCCGGG
TATCTGGCAA GCCACGACGA TAGAGTTACT GCCACTATTG AGTCATACCG TGGAGGAGCT
CCCGGTGACG CCGTGACCTG GTACTGGAGC CGCGATCCCT TTGCATTCAG CGATGACGAT
ATCGTTTCGA CCAGGTCGCT GGCTGCGCCC GAGATCGGCA ATTCTGTGAC GCTGGTATTC
AATGGCGACA TGGTTCGGGC ACGTGGTGAC GGAGTGCGCT ATGCGTTTTA TCGCCTGACA
GATCGTGCAG GGAACGCGTC TTCTTATTCA CTGGCGTTCA GGCTTGATGT TGCAGCTCAG
CCTGTTCCTC GAGTACTACC GCCACCGAGA ATCGAGGGGG CGTCCGGCTC GGCAAGCTAC
AGCACACTCA ATCCGTTGAG TGCTATCAAT GGCGCTATCG TGACAATACC TGCCCAGGCT
GACATTCGTC CTGGTGACGT TATTGCTGTC CAGTGGGCCG AGCCAGGCAG TACCGGGGCC
TACCGAACAG ACCAGCCGGA AGCTGCCAAC CCTCTCGAGT TCAGGATTCC GGCCAGTCGG
ATTCCCCAGC ATTTTGGTAA AACGATCCCT GTGTATTACG AGGTCACGGA GCCGAGCGCC
GTGGAGCTGC ATGTTTCAAG CAGGCATAAC CTCACGGTAT CGAGGGTCAG CGGTTTTCCG
GTGGTGCAAT GCGACAAGGT GTCGGGTGGA CGGTTGCCGC TGAGCAGCAT CGCCGATGGA
GGGCGCGCAG TGTTCACATT GAATAGTTGG CTCTTCATGG CGACGGACCA GTTCGTCAAT
CTTGAAGTGC GCGGGGTGAA CAACGCCAGT CAACTGGTGG TTGTTCCGGT ACTGAGTGAG
TATCCGGTGC CGTCGACCGG CGCAACAATC AGCGCTGGTC ATATCAGCAA GGCGGATCTG
CAGCGCTTCA AGGTTGGCAC CCAGCTGGAG ATCAGAGTGC GCGTGAGCTT CGACCAGAAA
CTCAGCTGGC AGTCGTTTCC TTCACTGGCA CCAACGTTGT ATGGCTGA
|
|---|
| Protein sequence | MDVHEAEADF KDLNMITTRL YDRFRHWLRR GFTALFRQDP GYPPPFIAYL LPDDPQWDEE
GLLPVDDVFN PLPIQIPAWD YYNEPRYDVI LTVYWDNTTL VYQKTWPGED FPSLPLEDLL
FDLPEYHLTA GIHSIRYEVT EYSGNSDWSV PQTVTIDLTA PMLAANQGQL RFDTSKITSG
YLASHDDRVT ATIESYRGGA PGDAVTWYWS RDPFAFSDDD IVSTRSLAAP EIGNSVTLVF
NGDMVRARGD GVRYAFYRLT DRAGNASSYS LAFRLDVAAQ PVPRVLPPPR IEGASGSASY
STLNPLSAIN GAIVTIPAQA DIRPGDVIAV QWAEPGSTGA YRTDQPEAAN PLEFRIPASR
IPQHFGKTIP VYYEVTEPSA VELHVSSRHN LTVSRVSGFP VVQCDKVSGG RLPLSSIADG
GRAVFTLNSW LFMATDQFVN LEVRGVNNAS QLVVVPVLSE YPVPSTGATI SAGHISKADL
QRFKVGTQLE IRVRVSFDQK LSWQSFPSLA PTLYG
|
|---|
| |