Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2201 |
Symbol | lpdA |
ID | 1183852 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2423740 |
End bp | 2425176 |
Gene Length | 1437 bp |
Protein Length | 478 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637393582 |
Product | 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase |
Protein accession | NP_792022 |
Protein GI | 28869403 |
COG category | [C] Energy production and conversion |
COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00788973 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCCAGA AATTCGACGT GGTAGTGATT GGCGCAGGCC CTGGCGGCTA TGTTGCCGCC ATCAAGGCAG CGCAACTTGG TCTCAAGACT GCCTGCATCG AGAAATACCA GGACAAGGAG GGCAAACTGG CCCTCGGTGG TACCTGCCTG AACGTAGGTT GCATTCCATC CAAGGCGCTG CTCGACAGCT CCTGGAAATT CTACGAAGCC AAGAACGGTT TCGCAGTGCA CGGCATTTCG ACATCTGAAG TGGCCATCGA CGTGCCCGCC ATGATCGGTC GCAAGTCGAC CATCGTCAAA GGCCTGACCG GCGGCGTCGC CAGCCTGTTC AAAGCCAACG GCGTGACCAC CCTGCAAGGC CACGGCAAAT TGCTGGCCGG CAAGAAAGTC GAGCTGACAG CGGCCGACGG CACTGTTGAA ATCATCGAAG CGGACCACGT GATCCTTGCT TCGGGCTCGC GTCCTATCGA CATTCCGCCA GCTCCGGTTG ATCAGAAAGT CATCGTTGAT TCCACCGGTG CGCTGGAATT TCAACAGGTT CCACAGCGTC TGGGCGTTAT CGGCGCAGGC GTAATCGGTC TGGAGCTGGG TTCGGTCTGG GCTCGCCTCG GCGCTCAGGT CACTGTTCTG GAAGCGCTGG ACAAGTTCAT CCCGGCCGCT GACGAAGCCG TTTCCAAGGA AGCGCTGAAA ACCTTCACCA AGCAGGGCCT GGACATCAAA CTGGGCGCTC GCGTGACCGG CTCCAAGGTC AACGGCGAAG AAGTGGTGGT CAGCTACACC GACGCAGCAG GCGAGCAGTC GATCACGTTC GACCGTCTGA TCGTTGCTGT CGGACGTCGT CCTGTGACCA CCGACCTGTT GGCCTCCGAC AGCGGTGTCG ACCTCGACGA GCGCGGTTTC ATCTACGTCG ATGACTACTG CACCACCAGC GTTCCGGGCG TCTATGCCAT CGGTGACGTG GTTCGCGGCC TGATGCTGGC GCACAAGGCC TCGGAAGAGG GCATCATGGT TGTCGAGCGC ATCAAGGGTC ACAAGGCCCA GATGAACTAC AACCTGATCC CGTCGGTTAT CTACACCCAC CCGGAAATCG CGTGGGTAGG CAAGACCGAA CAGACCCTCA AGGCCGAAGG CGTTGAAGTC AATGTCGGTA CGTTCCCGTT CGCAGCCAGC GGCCGTGCCA TGGCAGCCAA CGACACCGGT GGTTTCGTCA AGATCATTGC CGATGCCAAG ACCGACCGCG TTCTGGGTGT TCACGTTATT GGCCCGAGCG CTGCCGAACT GGTACAGCAG GGCGCCATCG CGATGGAATT CGGCAGCAGC GCAGAGGACA TCGGCATGAT GGTCTTCTCG CACCCGACTC TGTCCGAGGC ATTGCATGAA GCTGCACTGG CTGTGAATGG CGGCGCCATC CACATTCAGA ATCGCAAGAA ACGCTAA
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Protein sequence | MSQKFDVVVI GAGPGGYVAA IKAAQLGLKT ACIEKYQDKE GKLALGGTCL NVGCIPSKAL LDSSWKFYEA KNGFAVHGIS TSEVAIDVPA MIGRKSTIVK GLTGGVASLF KANGVTTLQG HGKLLAGKKV ELTAADGTVE IIEADHVILA SGSRPIDIPP APVDQKVIVD STGALEFQQV PQRLGVIGAG VIGLELGSVW ARLGAQVTVL EALDKFIPAA DEAVSKEALK TFTKQGLDIK LGARVTGSKV NGEEVVVSYT DAAGEQSITF DRLIVAVGRR PVTTDLLASD SGVDLDERGF IYVDDYCTTS VPGVYAIGDV VRGLMLAHKA SEEGIMVVER IKGHKAQMNY NLIPSVIYTH PEIAWVGKTE QTLKAEGVEV NVGTFPFAAS GRAMAANDTG GFVKIIADAK TDRVLGVHVI GPSAAELVQQ GAIAMEFGSS AEDIGMMVFS HPTLSEALHE AALAVNGGAI HIQNRKKR
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