Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2198 |
Symbol | sdhB |
ID | 1183849 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2418510 |
End bp | 2419214 |
Gene Length | 705 bp |
Protein Length | 234 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637393579 |
Product | succinate dehydrogenase, iron-sulfur protein |
Protein accession | NP_792019 |
Protein GI | 28869400 |
COG category | [C] Energy production and conversion |
COG ID | [COG0479] Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit |
TIGRFAM ID | [TIGR00384] succinate dehydrogenase and fumarate reductase iron-sulfur protein |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0187678 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTGCAAG TCAGTGTTTA TCGTTACAAC CCTGATCAGG ACGCTGCTCC GTTCATGCAG GAGTTTCAGG TCGATACCGG TGGCAAGGAC CTGATGGTGC TGGACGTGCT GGCGCTGGTC AAAGAACAGG ACGAAGGCTT TTCGTACCGT CGTTCGTGCC GTGAAGGCGT GTGCGGCTCC GATGGCATGA ACATCAATGG CAAGAACGGC CTGGCGTGCA TCACGCCGCT GTCTGCGGTT GTCGCCAAGA ACAAGCTGGT TGTCCGTCCT CTGCCAGGTT TGCCGGTTAT TCGTGACCTG GTCGTCGATA TGAGCATCTT CTACAAGCAA TACGAGAAGG TGAAGCCATT CCTGCAGAAC GACACGCCGG CTCCGGCCAT CGAACGTCTG CAAACGCCAG AAGAGCGCGA AAAGCTCGAT GGTCTGTACG AGTGCATTTT GTGCGCTTGC TGCTCGACCT CCTGCCCGTC CTTCTGGTGG AACCCCGACA AGTTCCTCGG TCCAGCTGCA CTGCTGCAAG CCTATCGTTT CCTGGCTGAC AGCCGTGACA CCCGCACCAA CGAGCGTCTG GCTTCGCTTG ATGACCCGTT CAGCGTATTC CGCTGCCGCG GCATCATGAA CTGCGTCAAC GTATGTCCGA AGGGCCTGAA CCCAACCAAG GCTATCGGTC ACGTGCGCAA CATGTTGTTG CAAAGCGGCA TCTGA
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Protein sequence | MLQVSVYRYN PDQDAAPFMQ EFQVDTGGKD LMVLDVLALV KEQDEGFSYR RSCREGVCGS DGMNINGKNG LACITPLSAV VAKNKLVVRP LPGLPVIRDL VVDMSIFYKQ YEKVKPFLQN DTPAPAIERL QTPEEREKLD GLYECILCAC CSTSCPSFWW NPDKFLGPAA LLQAYRFLAD SRDTRTNERL ASLDDPFSVF RCRGIMNCVN VCPKGLNPTK AIGHVRNMLL QSGI
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