| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2171 |
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| Symbol | |
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| ID | 1183822 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 2389452 |
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| End bp | 2391644 |
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| Gene Length | 2193 bp |
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| Protein Length | 730 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637393553 |
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| Product | sensory box/GGDEF domain/EAL domain protein |
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| Protein accession | NP_791993 |
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| Protein GI | 28869374 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCAACC TTCCGCCCGA CTCCGTGCCG CAAGCCCCTG CACAGCCAAC CTCCAGCGGG
CGGTCGACGA CAGACACGGA GCGCATTCTC GAGGAAACCC GCGCGCGCCT CGAACTGGCG
CTGGACCTGG CGCAGATGGG CACCTGGGAC CTGAACATCA CGCACAGCCG GCTGCAAGCC
TCGGCGCGTG CATCGTTTCT GCACGGCATG GACGCACAGC CCTTCGACGA TGACTCCAGG
CTGTTTTTCG ACAGGTTGCC CGTCGAGGAG CGCGATCGGG TCCGCGCGGC CTATACAGCG
GCACTTGAAA GCCGGCAGGA TTGTCTGCAG ATGACCTACC GCTTTCAAAT GAAAGACGGC
ACTTCACGCC TGATTGAAAG CCGTGGACGG ATCTACAGGG ATGAAATTGG CAACCCCGTC
AAGTTGGCCG GCACCCTGCT GGACATCACC CAACAGTGCG CTCAGGCGGC GCTTGAGGCC
AGCGAAGAGA AATTTGCCAA AGCGTTTCAC TCAAGCCCTG ACTCGATCAC CATCACTGAA
ATCGAGTCCG GTCGCTATGT CGAGGTCAAC GACGGCTTCT GTCGCCTGAC CGGCTTCAGC
GCCAGAGAAG TGCTTGGCCG TACCGCCCAC GAAATCGGCA TATGGACCGA CACCGTGCAG
CGCGAGTTCA TGATCGACGA ACTTCGCCAG AAAGGCCGGA TGCACCACCG GGAAATGAAC
GGGCGAGACA AAAAAGGTGC GCCGCTGGTG CTGGATGTAT CGGTCGAGTT CATCACCCTG
AACAATACCG CCTGCCTGCT GATGAATGCC CGTGACATCG GCCAGTTGAA AAGTGCCCAG
GCGCAGATCC AGCACCTGGC GTATCACGAC CCGCTGACCG GCCTGCCCAA TCGCGCCCTG
TTGATGGATC GTCTGAGCCA GCAAGTGTCG CTGCTCCAGC ACCAGAACCT GCGCGGTGCC
TTGTTGTTTC TTGACCTGGA CCACTTCAAA CACATCAATG ACTCACTCGG CCACCCGGTG
GGCGACAGCG TCCTGAGCGT CATTGCCGCA CGCCTGGAAG CCAGCGTGCG CCAGGAGGAC
ACCGTGGCCC GACTGGGCGG TGACGAATTT GTGGTGCTGA TCTGTGGCCT GGACGGTTCT
CTCGAGCACG TCACCCATCA GGTGCGCGTG CTGGCAGACA ACCTGCGCGT GCTGCTCGCC
GAACCGATGT TCCTCGACGG TCATCGCCTG CAAGTCACAC CAAGCGTCGG CATCGTGCTG
ATTCCGGACG ACGGCCTGAC CCCTGCCGAC CTGCTCAAGC GTGCCGATAT CGCCCTGTAT
CGCGCCAAGG ACTCCGGGCG CAACGCCTCG CAGTTTTTCC ATGTCTCCAT GCAACAGGCG
GTCAGTCAGC GTCTGCGCCT TGAAAACGAC CTGCGCCTGG CGCTCACCCG CAACGAATTT
CACCTGCACT TCCAGGCGCA GGTCGATTGC CGCACCAATC AGATCACCGG CGCGGAAGCC
CTGCTGCGCT GGCAGCACCC CGAATACGGG CTGCTGGCGC CCGACCAGTT TGTCCAGATA
CTGGAAGAGA GCGGCATGAT TCTGGAGGTT GGCAGCCGGA TTCTCGACGA TGCCTGTAAA
ATCGGCGGGC TTCTGCTGAG TCAGGGGCTG GTCTCGAAAG ACCGCTTTCT GATGGGTGTC
AATGTCAGTC CGCGTCAGTT TCGCCAGAGC GACTTTGTCG AGCGCGTCGA ACACAGTCTC
AAACAGCATC ACTTGCCGGC GACCATGCTC AAGCTGGAAA TAACCGAAGG CATCGTCATC
CAGAATCTGG ACGACACCAT TCTCAAGATG CGCAGCCTGA GGGACCTGGG TGTAGGCTTT
GCGATGGACG ATTTCGGCAC CGGCTATTCA TCGCTCACCT ACCTCAAGCG CTTGCCGGTG
GATACGCTGA AGATCGACCA GTCATTCGTT CAGGACGCCA CCAGCGACCC CAACGACGCA
GAAATCATCC GTGCCATCGT CGCCATGGCG CAGAGCCTCA ACTTGCACGT GATTGCCGAA
GGCGTCGAAA CCCCGGAGCA ACTGGCGTTT CTTGAGCGCG TGGGTTGTTA CAACTATCAG
GGCTACCTGT TCAGCGAGCC ACTGCCGGGG CCTGAATTCG AGACGCTGCT GCAACTCAGG
CGGCAGTTGC AGAGGTCTGC TTCTATCGAA TGA
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| Protein sequence | MLNLPPDSVP QAPAQPTSSG RSTTDTERIL EETRARLELA LDLAQMGTWD LNITHSRLQA
SARASFLHGM DAQPFDDDSR LFFDRLPVEE RDRVRAAYTA ALESRQDCLQ MTYRFQMKDG
TSRLIESRGR IYRDEIGNPV KLAGTLLDIT QQCAQAALEA SEEKFAKAFH SSPDSITITE
IESGRYVEVN DGFCRLTGFS AREVLGRTAH EIGIWTDTVQ REFMIDELRQ KGRMHHREMN
GRDKKGAPLV LDVSVEFITL NNTACLLMNA RDIGQLKSAQ AQIQHLAYHD PLTGLPNRAL
LMDRLSQQVS LLQHQNLRGA LLFLDLDHFK HINDSLGHPV GDSVLSVIAA RLEASVRQED
TVARLGGDEF VVLICGLDGS LEHVTHQVRV LADNLRVLLA EPMFLDGHRL QVTPSVGIVL
IPDDGLTPAD LLKRADIALY RAKDSGRNAS QFFHVSMQQA VSQRLRLEND LRLALTRNEF
HLHFQAQVDC RTNQITGAEA LLRWQHPEYG LLAPDQFVQI LEESGMILEV GSRILDDACK
IGGLLLSQGL VSKDRFLMGV NVSPRQFRQS DFVERVEHSL KQHHLPATML KLEITEGIVI
QNLDDTILKM RSLRDLGVGF AMDDFGTGYS SLTYLKRLPV DTLKIDQSFV QDATSDPNDA
EIIRAIVAMA QSLNLHVIAE GVETPEQLAF LERVGCYNYQ GYLFSEPLPG PEFETLLQLR
RQLQRSASIE
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