Gene PSPTO_2164 details

Gene Information

• Locus tag: PSPTO_2164
• Symbol: uvrB
• ID: 1183811
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 2378720
• End bp: 2380735
• Gene Length: 2016 bp
• Protein Length: 671 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637393542
• Product: excinuclease ABC, B subunit
• Protein accession: NP_791986
• Protein GI: 28869367
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0556] Helicase subunit of the DNA excision repair complex
• TIGRFAM ID: [TIGR00631] excinuclease ABC, B subunit

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.155475
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCGAGT TCCAGCTCGT TACCCGTTTT GAGCCAGCCG GTGATCAGCC CGAGGCCATT 
CGCCAACTGG TCGAAGGGAT CGACGCGGGG CTCGCGCACC AGACCTTGCT GGGTGTAACC 
GGCTCGGGCA AGACGTTCAG CATTGCCAAC GTCATTTCCC AGATCAAGCG TCCGACGCTG 
GTGCTGGCGC CGAACAAGAC CCTGGCGGCG CAGCTGTATG GCGAGTTCAA GGCGTTCTTC 
CCCAACAACG CCGTGGAGTA TTTCGTTTCT TACTACGACT ACTACCAGCC TGAAGCATAT 
GTGCCGTCGT CGGACACCTT CATCGAGAAG GATGCGTCGA TCAACGACCA CATCGAGCAG 
ATGCGGCTGT CTGCGACCAA GGCGCTGCTG GAGCGCAAGG ACGCGATTAT CGTTACAACC 
GTGTCATGCA TCTATGGTCT GGGCAGCCCG GAAACCTACC TGCGCATGGT GCTGCACGTC 
GACCGCGGCG ACAAACTCGA CCAGCGCGCC TTGCTGCGGC GTCTGGCGGA CCTGCAATAC 
ACCCGCAATG ACATGGACTT TGCCCGCGCG ACGTTCAGGG TGCGTGGCGA CGTGATCGAC 
ATCTACCCGG CCGAATCCGA CCTTGAAGCG ATCCGTATCG AGCTGTTCGA TGACGAAGTC 
GAGAGTCTGT CGGCGTTCGA TCCGCTGACT GGCGAGGTGA TCCGCAAACT GCCGCGCTTC 
ACCTTTTACC CGAAGAGCCA CTACGTCACG CCACGCGAAA CGCTGGTCGA GGCGATGGAA 
GGGATCAAGG TCGAGCTGCA AGAGCGGCTG GAATACCTTC GCAGCCAGAA CAAGCTGGTG 
GAAGCCCAGC GTCTGGAGCA GCGCACCCGT TTCGATCTGG AAATGATGCT GGAGCTGGGT 
TACTGCAACG GTATCGAGAA CTACTCGCGC TACCTGTCGG GTCGTCCGTC CGGCGCGCCG 
CCGCCGACCT TGTTCGACTA CCTGCCCGCC GATGCTTTGC TGGTGATCGA CGAGTCCCAC 
GTCAGCGTGC CGCAGGTCGG CGCGATGTAC AAAGGCGACC GTTCACGCAA GGAAACCCTG 
GTCGAGTACG GTTTTCGTCT GCCATCGGCG CTGGACAACC GGCCCATGCG CTTCGACGAG 
TGGGAAGCTA TCAGCCCGCA GACCATCTTT GTTTCTGCGA CACCGGGCAA CTATGAAGCG 
GAGCATGCAG GCCGTATTGT CGAGCAGGTG GTGCGCCCGA CCGGTCTGGT CGACCCGCAG 
ATCGAAATCC GCCCGGCGCT GACTCAGGTT GATGACCTCT TGTCGGAAAT TCACAAGCGT 
GCGGCGCTGG AGGAGCGGGT GCTGGTCACC ACGCTGACCA AGCGCATGTC CGAGGATCTG 
ACCGATTACC TCAGCGACCA CGGCGTGCGT GTGCGTTATC TGCACTCGGA CATCGACACG 
GTGGAGCGCG TCGAGATCAT TCGCGATTTG CGATTGGGTA CGTTTGACGT GCTGGTGGGC 
ATCAACCTGC TGCGTGAGGG CCTGGACATG CCGGAAGTGT CGCTGGTGGC GATTCTCGAT 
GCCGACAAGG AAGGCTTTCT GCGGTCCGAT CGCTCGCTGA TCCAGACCAT CGGCCGGGCA 
GCGCGTAACC TCAACGGGCG GGCGATTCTG TACGCCGACC GCATCACCGG ATCGATGGAG 
CGCGCCATCG GCGAGACCGA GCGACGTCGC GAGAAACAGA TCGCCTTCAA CCTGGAACAC 
GGCATCACGC CCAAAGGCGT GTTCAAGGAC GTCGCCGACA TCATGGAAGG TGCCACCGTG 
CCGGGTTCGC GCAGCAAGAA GCGCAAAGGC ATGGCCAAGG CCGCCGAAGA AAGCGCCCGT 
TACGAAAACG AGTTGCGCTC GCCGAGCGAG ATCAACAAGC GCATTCGCCA ACTGGAAGAA 
AAAATGTACC AACTGGCCCG CGACCTGGAA TTCGAGGCCG CCGCGCAAAT GCGCGACGAG 
ATCGGCAAAT TGCGCGAGCG GTTGTTGGCG GTTTGA 

 

Protein sequence

MSEFQLVTRF EPAGDQPEAI RQLVEGIDAG LAHQTLLGVT GSGKTFSIAN VISQIKRPTL 
VLAPNKTLAA QLYGEFKAFF PNNAVEYFVS YYDYYQPEAY VPSSDTFIEK DASINDHIEQ 
MRLSATKALL ERKDAIIVTT VSCIYGLGSP ETYLRMVLHV DRGDKLDQRA LLRRLADLQY 
TRNDMDFARA TFRVRGDVID IYPAESDLEA IRIELFDDEV ESLSAFDPLT GEVIRKLPRF 
TFYPKSHYVT PRETLVEAME GIKVELQERL EYLRSQNKLV EAQRLEQRTR FDLEMMLELG 
YCNGIENYSR YLSGRPSGAP PPTLFDYLPA DALLVIDESH VSVPQVGAMY KGDRSRKETL 
VEYGFRLPSA LDNRPMRFDE WEAISPQTIF VSATPGNYEA EHAGRIVEQV VRPTGLVDPQ 
IEIRPALTQV DDLLSEIHKR AALEERVLVT TLTKRMSEDL TDYLSDHGVR VRYLHSDIDT 
VERVEIIRDL RLGTFDVLVG INLLREGLDM PEVSLVAILD ADKEGFLRSD RSLIQTIGRA 
ARNLNGRAIL YADRITGSME RAIGETERRR EKQIAFNLEH GITPKGVFKD VADIMEGATV 
PGSRSKKRKG MAKAAEESAR YENELRSPSE INKRIRQLEE KMYQLARDLE FEAAAQMRDE 
IGKLRERLLA V