| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2160 |
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| Symbol | |
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| ID | 1183807 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 2372934 |
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| End bp | 2374106 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637393538 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | NP_791982 |
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| Protein GI | 28869363 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.337788 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACGCT CTCGATACCC TCGACGCGCC CTTCTGGTGG CGCTGTGCCT GTTCCCGGTC
ATTGCCGTGT GTGCCTGGCA GATCCTGCCC GACGGCACGG GCACTGTATC GACCGTGACA
GTGACCCGCG GCACTATCGA AAACAGCGTG ACAGCACTGG GCACCCTGCA ACCGCGCAGT
TACGTGGACG TCGGCTCGCA GGCCAGCGGG CAGATCCTGA AGATTCATGC GCAGGTGGGT
GATCAGGTCA AGGAAGGCGA TTTGCTGGTG GAAATCGACC CATCGACGCA AAAAGCCAAG
CTCGACGCCG CGCGCTACGC CATCGACAAC CTCAAGGCCC AGCTTCAGGA GCAGCGTGCG
CTGCACGAGC TGGCCGAGCA AAAGCAACAA CGGCAGAAAA GCCTTGCCGC AGGCGGTGCC
ACGCGTGCCG AGGACGTGCA GGCGGCGCAA TCGGAATTTC GTGCCACCCA GGCAAGGGTC
GACATGTTCA AGGCGCAGAT TCTCGAAGCC CAGGCCGCGC TACGCAGTGA CGAAGCGGCG
CTGGGTTACA CCCGCATTTA CGCGCCCATG AGCGGCACCG TTGTCGCGCT GGATGCCCGC
GAGGGTCAGA CCCTCAATGC GCAACAACAG ACCCCGTTGA TTCTGCGCAT CGCCCGGTTG
TCGCCCATGA CCGTCTGGGC CGAAGTCTCG GAAGCCGACA TCGGCCACGT CAAACCGGGT
ATGACCGCTT ATTTCACTAC GCTTAGCGGC GGCAACCGGC GCTGGAACAG TACCGTGCGG
CAGATTCTGC CGGTGCCGCC CAGGCCGCTG GACCAGGCCA ATCAGGGCGG CGGCAGCCCG
AGCAGTTCGC GTAAAAGCGG TGGTGGCCGA GTGGTGCTCT ACACCGTGCT GCTGGATGTC
GACAACAGCG ATCAGGCGCT GATGGCAGAA ATGACCGCGC AGATCTTCTT CGTCGCCGGC
AAAGCCGAAA ATACCCTCAC CGCCCCGCTC GCGGCCCTGC AAAACGGCGC GCAAGCCGAT
GTTCAGACCG CACAGGTGCT GGCCGCCAAT GGTGAGGTAC AGAAGCGCCA GGTACGCACC
GGGATCAGTG ACCGTCTGCG CGTGCAGATT CTCGACGGGC TCAGCGAAGG TGATCGCCTG
CTGGTGCCCG CTCCCGTCGG CAGCGGAGGC TAG
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| Protein sequence | MKRSRYPRRA LLVALCLFPV IAVCAWQILP DGTGTVSTVT VTRGTIENSV TALGTLQPRS
YVDVGSQASG QILKIHAQVG DQVKEGDLLV EIDPSTQKAK LDAARYAIDN LKAQLQEQRA
LHELAEQKQQ RQKSLAAGGA TRAEDVQAAQ SEFRATQARV DMFKAQILEA QAALRSDEAA
LGYTRIYAPM SGTVVALDAR EGQTLNAQQQ TPLILRIARL SPMTVWAEVS EADIGHVKPG
MTAYFTTLSG GNRRWNSTVR QILPVPPRPL DQANQGGGSP SSSRKSGGGR VVLYTVLLDV
DNSDQALMAE MTAQIFFVAG KAENTLTAPL AALQNGAQAD VQTAQVLAAN GEVQKRQVRT
GISDRLRVQI LDGLSEGDRL LVPAPVGSGG
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