| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2153 |
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| Symbol | pvdE |
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| ID | 1183800 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 2362311 |
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| End bp | 2363975 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637393531 |
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| Product | pyoverdine ABC transporter, ATP-binding/permease protein |
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| Protein accession | NP_791975 |
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| Protein GI | 28869356 |
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| COG category | [P] Inorganic ion transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4615] ABC-type siderophore export system, fused ATPase and permease components |
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| TIGRFAM ID | [TIGR01194] cyclic peptide transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.105223 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCGCA AAACTGAAAG CCTCGCCCGG GAAACCCTGA GGATCCTCAA GCCGTTCTGG
TGGCTGGTGG CGCTGTCGAC TGTGCTGGGC ATCGTCAGTG GCCTGAGCGT CACCGGCCTG
CTGGCCACCA TCAACAATGC GCTGAACATG CCCGGCGGGC CAGACACCCA CACCGCGCTG
CTGTTCGCCG GGCTGTGTGT ACTGACGCTG GCCTGCGCGA CACTGTCCAA TCTGTCGACC
AACTACGTCG GCCAGCGCGT GGTCGCCAAT CTGCGTCGCG AGCTGGCCGC CAAGGTGCTG
GTCGCGCCCA TCGAGCAACT GGAGCGCTAC CGCTCCCACC GTTTGATTCC GGTGCTGCTC
AACGACGTCA ACACCCTCAG CACCTTCGCC CTGTCGGTCG CGCCGATGGT GATTTCGTTC
ACTGTCACGC TCGGCTGCCT GACTTATCTG GCGTTGTTGT CGTGGCAGAT TCTGGCCCTG
ACCGTGCTCA CCGTGGTGCT CGGCACGGGC GCGCAGTACC TGGCCCATGC GTTCGGCATG
CGCAGCATTC TGGCGGCGCG CAACAGTGAA GACGAACTGC AGAAGCACTA TCAGGCGCTG
TCCGCAGGTG CCAAGGAACT GCGCATTCAG CGCAAGCGTC GTCAGCACAT GCTCGATGAG
AAGATTCACG GTGCCACCGA AAACATCTGC CGCTCGAACA TTCGCGCCGC CAACATCTTC
GTCAGCGCGG AAACCTTCGG TTCGATGCTG TTCTTTGCCG TGATCGGCAT GGCCATCGCC
TTCCAGGCCA TGTGGCCGAC CACTGAAAAG ACCGTGCTGG GCGGCTTCGT GCTGGTGATG
CTGTACATGA AAGGCCCGCT GGAAAGGCTG ATTACCGCCC TGCCCGGTAT CAGTCGCGCG
CAGATCGCCA TGCGCCGTAT TGCCGAGCTG TCGTGGAAGT TTTCAAGCCC CGAACCACAC
CTGCTGGTCA GCGACCGCCC TAACTCGCTG GCGAATATGC AGACCCTGGA ACTGCACAAC
CTGCGCTATG ACTACCCGCC GGTCGAAGGC AGCGACGCCT TTCATCTCGG GCCGGTCGAC
TTGAGCATCA AACAGGGCGA TATCGTGTTC ATCGTCGGCG AGAACGGCTG CGGCAAGACC
ACGCTGATCA AGCTGCTGCT GGGCCTGTAC ACGCCGCAGC AAGGCGAAAT CCACCTGAAT
GGCCAAGCCG TAACCCCGGA AAATCTCGAC GATTACCGCC AACTGTTCAC CACGATCTTC
GCCGATTACT ACCTGTTCGA TGAGCCCCTG CAGGGTGAGG CCGCGTTGCC GCAAGACGCC
GGCAAATACC TGGAGCGCCT GGACATCGCG CACAAGGTCA GCATCCAGGA CGGCGCGTTT
ACCACCACCG ACCTGTCCAC CGGACAGCGC AAGCGTCTGG CGCTGATCAA TGCGTGGCTG
GACGAACGTC AGGTGCTGGT GTTCGACGAG TGGGCCGCCG ACCAGGACCC GGCGTTCCGG
CGCGTGTTCT ACACCGAACT GCTACCGGAA CTGAAGCAGC AAGGCAAGAC CATCATCGTC
ATCTCTCACG ACGACCGCTA TTTCTACATC GCCGACCAAC TGGTGCGCAT GCAGGCGGGC
CGGATCGAGG TCGAGCAGGC GCAGAGCCAG GCCGCTCAAG CCTGA
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| Protein sequence | MTRKTESLAR ETLRILKPFW WLVALSTVLG IVSGLSVTGL LATINNALNM PGGPDTHTAL
LFAGLCVLTL ACATLSNLST NYVGQRVVAN LRRELAAKVL VAPIEQLERY RSHRLIPVLL
NDVNTLSTFA LSVAPMVISF TVTLGCLTYL ALLSWQILAL TVLTVVLGTG AQYLAHAFGM
RSILAARNSE DELQKHYQAL SAGAKELRIQ RKRRQHMLDE KIHGATENIC RSNIRAANIF
VSAETFGSML FFAVIGMAIA FQAMWPTTEK TVLGGFVLVM LYMKGPLERL ITALPGISRA
QIAMRRIAEL SWKFSSPEPH LLVSDRPNSL ANMQTLELHN LRYDYPPVEG SDAFHLGPVD
LSIKQGDIVF IVGENGCGKT TLIKLLLGLY TPQQGEIHLN GQAVTPENLD DYRQLFTTIF
ADYYLFDEPL QGEAALPQDA GKYLERLDIA HKVSIQDGAF TTTDLSTGQR KRLALINAWL
DERQVLVFDE WAADQDPAFR RVFYTELLPE LKQQGKTIIV ISHDDRYFYI ADQLVRMQAG
RIEVEQAQSQ AAQA
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