| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2151 |
|---|
| Symbol | |
|---|
| ID | 1183798 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 2357035 |
|---|
| End bp | 2359512 |
|---|
| Gene Length | 2478 bp |
|---|
| Protein Length | 825 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637393529 |
|---|
| Product | TonB-dependent siderophore receptor, putative |
|---|
| Protein accession | NP_791973 |
|---|
| Protein GI | 28869354 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0848793 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTGCACGA CCAAACTGCG CAAATACATT ATCCTGCACC CTCGCTTTCA ACGAGTCATC
CCTCCCATGC CAACACCCTC CAACCGTCTG CGCACAGGAC GCGTGAAAAC GCGTGGCCTG
CGTCTGGGCG GGATGGGGCT GGTGCTGGCA TTGGCTTTTC AGGGCGAGGC ACTGGCTGAA
GAGTTCGAGT TCGATATCCC CGCACAGGCC CTGAACAGCG CCCTCAAGGA ACTGGGGCGG
CAAGGCGACC TGCAAATCCT CTACAACCCC GACGATGTGA ACGGCAAGCT CGGCAGCGCG
GTGCACGGCA GGTTGACGCC TGAACAGGCA GTGGCGGACC TGCTGAAAAA AGCCGACGTG
GCACACAGCT TCGAGGCCAA CACCCTGATC CTCGGCGTCG CCGCCTCCGC GCAGCCCATG
AACCTGGGGC CGGTGGCGAT CAAAGGCGAC CATTTCGGCA TCACCACCGA AGGCAGCGGT
TCGTATGCGG CCACCGGTAT CAGCATCAAC AAGACCGCAC AATCATTGCG CGATACCCCG
CAGTCAGTCA CCGTCGTGAC CCGTCAGTTG ATGAACGACA AGAACCTCAC CGGCCTGGAC
GAGGTGATGG CGCAAACGCC CGGCATCACT TTTTCGCAAC GCAACTTTGG CTCTCATGTG
TTCAGCTCAC GCGGCTTTGC GCTGGAAGAC GAGAGCTACA CCATCGACGG CGTGGCCGGT
CAGGGTTACA GCGTGACCGG CTGGATGACC CCGGACATGC AAATCTACGA CCGCGTCGAG
GTGCTGCGTG GCGCAGCCGG GTTGCTGATC GGTGCGGGCA ACCCCGGTGG CGCGGTCAAT
CTGGTGCGCA AGCGGCCGAC CGCCCTCCCG CAGTTTTCGA TCACCACCCG CGCCGGCAGT
TGGGACCAGT ACCGCGTCGA TCTGGACGGC AGCAGCAAGC TCAACGATTC GGGCAGCGTG
CGCGGGCGCT TTGTAACCTC TTACGAAGAC CGTGGCTCTT TCATCGACGG GCTGCAAAAA
ACCGCGCCGC TGCTGTACGG CATTCTGGAA ACCGACCTGA GCGAAGACAC TACTCTGACC
CTGGGTCTGC GCCATCAGAG CGCGGACATT CACGGCTTTT CGATTTTCGG CCTGCCCCGC
TACAGCAACG GCAAGGCTAT CGATCTGCCG CGCTCCACCT CGCTGGCCCA GAACTGGAAC
CGCCACCAGA CGCGGACCGA CGAAGTGTTC AGTGAGCTGG AGACACACTT TGACGAGAAC
TGGAGCGGCA CGCTGTCAGC GACCCACTCC GAGGGCGCGT TCGAGCAGAA AGTCGCCTAT
GCACAAGGGG CCATAGACCC TGCGACGCAA AGCGGTTCGC GACTGGTCAA AACCCTGTTT
CGCTCGGACG CGCTGCGAAG CGACGGTTTC GACAGCCATC TGGATGGTCG TTTCGATGCC
TTTGGCCTGA CCCATCAGGT GATGGTCGGT GGCAATTGGT CCGAGCAAAA ACGTGATTCT
CGCTACGCCA CGGTCAACGC CAATCAACCG CTGGACATCT TCAATACCGA TCACAACGCG
ATTACCGAAC CTGCGCGCCC GGCCTGGCGC AGCACCGATT ACAGCGACAA GCGTTATGGC
GTTTACAGCA ACCTGCGCCT GAGCCTGACC GAGTCGTTGA GCCTGGTCAT GGGTGGGCGA
GTCAGTTGGT ATGACTATCA GAGCCAGTCC GCAGGCGTGA CCACTCGCGC CCAGGAAAAC
AATCAGGTCA CGCCGTTTCT GGGTGTGATC TACGACCTGA ACCGCGACTG GTCGTGGTAT
GCCAGCTACA CCGATATCTT TCTGCCGCAG AGCGGTTATC GCAGCGCATC CGGCGCATTC
CTTGACCCGG CGATCGGCGC CAGCCATGAA ACCGGTATCA AGGGCGAGCT GTTCGACAAG
CGCCTGAATG TGTCTTTTGC GCTGTTCTAT GTGAAACAGA AAGACGTGGC GGTCGAGGAC
GATGCCCATG CAGGCCAGTG CCTGAGCAAC GACGCTTACG GCACCTGCTA TGTGAATGGC
GACATCCGGC GCAGCAAGGG TATCGACATG GAAATCAGTG GCGAGCCGCT GCCTGGGTTG
CAGACCCTGG CCGGTTACAC TTTCAACCTT ACACGCGGCA GCGATGGGCA ATCTATTTCG
GCAGAAACAC CCCGGCATAT GGTGCGCCTG TCCAGCAGCT ACACCCTGCC CGGCACCTGG
CGTCGCCTGA CTGTCGGTGC CGGTGTGTCG GCGCAGAGCG GCTACTCGGA ACACGAGACG
ACCCAGCCCA TCGACAACCC TGGCCGCGCC ATCTGGGACG CGCGGGCCTC GTGGAAGATC
GACGAACACT GGTCAGTGGC CCTCAACGGC AACAACCTGC TGGATCATAA ATACTACAAG
GCCACCGGCG ACATCGACCG CGGCAACTAC TACGGAGACC CGCGCAACTA CGTCATGACG
TTGCGCGGGG ATTTTTAG
|
|---|
| Protein sequence | MCTTKLRKYI ILHPRFQRVI PPMPTPSNRL RTGRVKTRGL RLGGMGLVLA LAFQGEALAE
EFEFDIPAQA LNSALKELGR QGDLQILYNP DDVNGKLGSA VHGRLTPEQA VADLLKKADV
AHSFEANTLI LGVAASAQPM NLGPVAIKGD HFGITTEGSG SYAATGISIN KTAQSLRDTP
QSVTVVTRQL MNDKNLTGLD EVMAQTPGIT FSQRNFGSHV FSSRGFALED ESYTIDGVAG
QGYSVTGWMT PDMQIYDRVE VLRGAAGLLI GAGNPGGAVN LVRKRPTALP QFSITTRAGS
WDQYRVDLDG SSKLNDSGSV RGRFVTSYED RGSFIDGLQK TAPLLYGILE TDLSEDTTLT
LGLRHQSADI HGFSIFGLPR YSNGKAIDLP RSTSLAQNWN RHQTRTDEVF SELETHFDEN
WSGTLSATHS EGAFEQKVAY AQGAIDPATQ SGSRLVKTLF RSDALRSDGF DSHLDGRFDA
FGLTHQVMVG GNWSEQKRDS RYATVNANQP LDIFNTDHNA ITEPARPAWR STDYSDKRYG
VYSNLRLSLT ESLSLVMGGR VSWYDYQSQS AGVTTRAQEN NQVTPFLGVI YDLNRDWSWY
ASYTDIFLPQ SGYRSASGAF LDPAIGASHE TGIKGELFDK RLNVSFALFY VKQKDVAVED
DAHAGQCLSN DAYGTCYVNG DIRRSKGIDM EISGEPLPGL QTLAGYTFNL TRGSDGQSIS
AETPRHMVRL SSSYTLPGTW RRLTVGAGVS AQSGYSEHET TQPIDNPGRA IWDARASWKI
DEHWSVALNG NNLLDHKYYK ATGDIDRGNY YGDPRNYVMT LRGDF
|
|---|
| |