| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2136 |
|---|
| Symbol | daT |
|---|
| ID | 1183783 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 2320980 |
|---|
| End bp | 2322446 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637393514 |
|---|
| Product | 2,4-diaminobutyrate 4-transaminase |
|---|
| Protein accession | NP_791958 |
|---|
| Protein GI | 28869339 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
|---|
| TIGRFAM ID | [TIGR00709] 2,4-diaminobutyrate 4-transaminases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.558173 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCACC GTCATGCATC AGGTCATTCA ACCAGCGTAT TGAGGGTTGC ACAGATGTCA
GTCGCTACCA GGTTTATCGA TGATCAGTTG ACCCGGATAA CTCCGGCAGC GGCCGAGACG
CTCTACCAGT TCGACGAGTC GCCATTGCTG GCCCGGCAGA GTCGCCAGGA GTCCAACGCG
CGCAGTTACC CACGGCGCAT CCCGCTGGCG CTCAAGCGCG CCAAGGGCAT TCATGTCGAG
GACGTCGAAG GGCGGCGCTT CATCGATTGC CTGGCAGGCG CGGGCACGCT GGCGCTTGGG
CATAACCATC CGGTGATCAT CGACGCGATT CAGCAGGTGA TCAGCGATGA ATTGCCGCTG
CACACCCTGG ACCTCACCAC GCCGGTCAAA GACCAGTTCG TGCAGGACCT GTTCGGCCTG
CTGCCGCCAG CGCTGGCCAA TGAGGCGAAG ATCCAGTTCT GCGGCCCGAC CGGTACCGAT
GCGGTGGAAG CTGCGTTGAA ACTGGTGCGC ACTGCCACCG GGCGCAGCAC CGTGTTGTCG
TTTCAGGGCG GTTATCACGG CATGAGCCAG GGCGCGTTGA GCCTGATGGG CAGTCTTGGG
CCGAAAAAGC CGTTGGGTGC CTTGCTCAGC AGCGGCGTGC AGTTTCTGCC GTATCCGTAC
GATTACCGCT GCCCGTTCGG GCTGGGTGGC GAACAGGGCG TGCGCGCCAA CCTGCACTAC
CTGGAAAACC TGCTGAATGA CCCGGAAGCG GGTGTGCAAT TGCCTGCCGC GGTCATTCTT
GAAGTGGTGC AGGGCGAGGG CGGGGTGATC CCGGCTGATC TGGACTGGCT GCGCGGTGTG
CGACGGATCA CGGAAAAGGC CGGTGTGGCG CTGATCGTCG ACGAAATTCA GAGCGGCTTT
GCGCGCACCG GCAAAATGTT TGCCTTTGAG CACGCCGGGA TCATTCCCGA TGTGGTGGTC
CTGTCCAAAG CCATCGGCGG CAGCCTGCCG CTGGCGGTGG TGGTTTACCG TTCCTGGCTC
GACACCTGGC TGCCGGGCGC GCATGCCGGG ACATTCCGTG GCAATCAGAT GGCGATGGCC
ACCGGTTCGG CGGTGATGCG CTATCTCCAG GAACACAATG TCTGTGAGCA CGCGACGGCG
ATGGGCGCGC GGCTGGTCGG TCATTTGCAA GCGCTGCAGC GCGACTTCCC GCAGTTGGGC
GACATTCGCG GTCGCGGGCT GATGCTGGGT GTCGAACTGG TCGACCCGGC GGGTGCGCGC
GATGCGCAAG GTCATCCACC GGTGTTTGCC CGTCTGGCCC CGCTGATCCA GCGCGAATGC
CTCAAGCGCG GGCTGATTCT GGAACTGGGC GGTCGGCATG GCAGCGTGGT GCGTTTCCTG
CCGCCACTGG TGATCACCGC CGAGCAGATC GACGAAGTGG CAGAAATCTT TGGTCGTGCG
CTTAACGCCG CCGTCGCACA GCTTTAA
|
|---|
| Protein sequence | MAHRHASGHS TSVLRVAQMS VATRFIDDQL TRITPAAAET LYQFDESPLL ARQSRQESNA
RSYPRRIPLA LKRAKGIHVE DVEGRRFIDC LAGAGTLALG HNHPVIIDAI QQVISDELPL
HTLDLTTPVK DQFVQDLFGL LPPALANEAK IQFCGPTGTD AVEAALKLVR TATGRSTVLS
FQGGYHGMSQ GALSLMGSLG PKKPLGALLS SGVQFLPYPY DYRCPFGLGG EQGVRANLHY
LENLLNDPEA GVQLPAAVIL EVVQGEGGVI PADLDWLRGV RRITEKAGVA LIVDEIQSGF
ARTGKMFAFE HAGIIPDVVV LSKAIGGSLP LAVVVYRSWL DTWLPGAHAG TFRGNQMAMA
TGSAVMRYLQ EHNVCEHATA MGARLVGHLQ ALQRDFPQLG DIRGRGLMLG VELVDPAGAR
DAQGHPPVFA RLAPLIQREC LKRGLILELG GRHGSVVRFL PPLVITAEQI DEVAEIFGRA
LNAAVAQL
|
|---|
| |