Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2111 |
Symbol | lolE |
ID | 1183758 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2286086 |
End bp | 2287369 |
Gene Length | 1284 bp |
Protein Length | 427 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637393489 |
Product | lipoprotein releasing system transmembrane protein LolE |
Protein accession | NP_791933 |
Protein GI | 28869314 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.386264 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCATTTTC ACGACGCTAT TTTCCACGGT GTTTCGCCAA TGTTCAGACC GTTACCCCTC TTTATCGGCA TGCGCTATAC CCGCGCCAAA CGCCGCAAAA GCTTCATTTC GTTCATTTCA ATGACCTCGA TGATCGGTCT GGCACTTGGT GTGCTGGCGA TGATCGTGGT CTTGTCGGTG ATGAACGGTT TCCAGCGGGA AATGAGCTCG CGGATTCTGG GCATGGTGCC GCATGCGGTG ATCGCGGGCG CCAAGCCGGT GGATGACTGG AAGCCGCTGG CCGAAGCCGC CCTGAAAAAC CCGGAAGTCA CTGCTGCCGT GCCGTTTACC GACATGGAAG GCATGCTCTC CTACAAAGGT TCAATGCAAC CGATCCAGAT CAGCGGCGTC GATCCTGCGC TGGAACACGA AGTTTCCATC GTCACTCAGC ACATCACCCG CGGCAGCCTC GCAGACCTGA AACCGGGCGA GTTCGGAGTG GTGCTGGGTG ATCTCACTGC GCGGCGCTTT CGCCTGACCA TCGGCGACAA ACTGACCTTG ATCGTGCCCG AAGTCAGCAG CGCGCCGGGC GGCATCACGC CGCGCCTGCA ACGCCTGACG GTGGTGGGTA TCTTCAAGGT CGGCGCAGAG CTGGACGGCT CGATGGGACT GATCAACATC GCCGACGCCG CGCAGATGCA GCGCTGGCAG CCTGATCAGG TGCAGGGCGT GCGTCTGGCG CTCAAAGATC TGTACAAGGC GCCGCAGGTG TCTACGGCGA TCGCTTCGGG GCTGGGTGAG GGCTATCACG CCGATGACTG GACTCACACA CAAGGCAGCC TGTTCAGCGC GATGAAAATG GAAAAGACCA TGATCGGCCT GTTACTGCTG ATGATTGTCG CCGTTGCAGC GTTCAACATC ATTGCCACGC TGATCATGGT GGTCAATGAC AAGGGCGCGG ACATCGCCAT CCTGCGCACC ATCGGCGCGA CGCCGCGGCA GATCATGGCG ATCTTCATGG TTCAGGGCAC CGTGATCGGT ATTGTCGGCA CGTTGATCGG GGGCGTTCTC GGCATCATTG CCGCCTTGAA CGTCAGCAGC CTGGTGGGCT GGATCGAACG GGTCAGCGGC CAGCACATCT TCAGTTCCGA TGTGTACTTC ATCAGCAACC TGCCTTCCGA GCTGCAAGGC GGCGATGTGT TGCTAATCTG CAGCGCCGGT TTCATCCTGA GCTTTCTGGC CACGGTCTAC CCGGCATGGC GCGCCGCGCA GATCGAGCCG GCGCATGCAC TGCGTTATGA GTGA
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Protein sequence | MHFHDAIFHG VSPMFRPLPL FIGMRYTRAK RRKSFISFIS MTSMIGLALG VLAMIVVLSV MNGFQREMSS RILGMVPHAV IAGAKPVDDW KPLAEAALKN PEVTAAVPFT DMEGMLSYKG SMQPIQISGV DPALEHEVSI VTQHITRGSL ADLKPGEFGV VLGDLTARRF RLTIGDKLTL IVPEVSSAPG GITPRLQRLT VVGIFKVGAE LDGSMGLINI ADAAQMQRWQ PDQVQGVRLA LKDLYKAPQV STAIASGLGE GYHADDWTHT QGSLFSAMKM EKTMIGLLLL MIVAVAAFNI IATLIMVVND KGADIAILRT IGATPRQIMA IFMVQGTVIG IVGTLIGGVL GIIAALNVSS LVGWIERVSG QHIFSSDVYF ISNLPSELQG GDVLLICSAG FILSFLATVY PAWRAAQIEP AHALRYE
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