| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2048 |
|---|
| Symbol | |
|---|
| ID | 1183693 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 2230681 |
|---|
| End bp | 2231403 |
|---|
| Gene Length | 723 bp |
|---|
| Protein Length | 240 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637393426 |
|---|
| Product | transcriptional regulator, LuxR family |
|---|
| Protein accession | NP_791871 |
|---|
| Protein GI | 28869252 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0912162 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGCAGTG CCATGACAGA AAGCGCAACC AAGGATCTAT TGATACAGCA GATGGTGAGC
ACAATTACTG AGCTCGATGG CCAGACCGCC ATCGAAAAAG CCCTCCAGTG GCTGCGACGC
GAATGCGACA GTGAGCGGGC CATGTTCTAT CAGTTTAAAG GCCCGATGCT GCTGACGTTC
ATCACCTCCA ATGTTGACGA TGCGTGGGGT CAGGCGTATC GGCAGCATGA ATTGATCACG
CAGGACCCGG TCATCCGCTG TTATCGCAAC CAACTGGGCT TTTTGAACTG GCAGGATGCG
TTCAAACAAT ACCCGGCGTC AGCCTGTTAC GAAGAGGCGG TCGATGCCTG CGAACTGCTC
CCGGCCATTT CCTACGGCTA CACCAGCCAT TGCCGTGGCA CAGAAAGCGT GACGTCGGTC
TGTACGCTGA GCGAAGTGGA ACGGACGATT TCCGCTGAAC AAAAATACCT GGTCAGCAGT
CTCATGCCTG TGTTGCACAG TGTGGCGCGC GGGCTGAAGT TCTCTTCTCG CGGCCTGACG
CTCCGTGAAC TTGAAGTGCT GCAGTGGGCG AGGGATGGAA AAACCGCTTG GGAGATATCG
ATAATTCGCG ATGTCTCCGA GTCGACGGTG AAGTACCACC TCAAGACCAT CTACTCAAAG
CTCGGCGTCG CCAACAGGGC GCAGGCGGTA GGCGAAGCCC TGTGCCGCGG CCTTATCAGG
TAA
|
|---|
| Protein sequence | MCSAMTESAT KDLLIQQMVS TITELDGQTA IEKALQWLRR ECDSERAMFY QFKGPMLLTF
ITSNVDDAWG QAYRQHELIT QDPVIRCYRN QLGFLNWQDA FKQYPASACY EEAVDACELL
PAISYGYTSH CRGTESVTSV CTLSEVERTI SAEQKYLVSS LMPVLHSVAR GLKFSSRGLT
LRELEVLQWA RDGKTAWEIS IIRDVSESTV KYHLKTIYSK LGVANRAQAV GEALCRGLIR
|
|---|
| |