Gene PSPTO_2043 details

Gene Information

• Locus tag: PSPTO_2043
• Symbol: aroC
• ID: 1183688
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 2226176
• End bp: 2227267
• Gene Length: 1092 bp
• Protein Length: 363 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 637393421
• Product: chorismate synthase
• Protein accession: NP_791866
• Protein GI: 28869247
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0082] Chorismate synthase
• TIGRFAM ID: [TIGR00033] chorismate synthase

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00765141
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCGGCA ACACTTTCGG CAAGCTGTTC ACTGTCACCA CCGCCGGCGA AAGCCACGGC 
CCGGCGCTGG TCGCTATCGT CGACGGCTGC CCGCCGGGCC TGGAGCTGGA CCTGCAAGAC 
CTGCAGCGTG ATCTGGACCG GCGCAAGCCG GGTACTAGCC GCCATACCAC GCAGCGTCAG 
GAAGCCGATG AGGTCGAGAT CCTCTCGGGC GTCTTCGAGG GCAAGACCAC CGGTGCATCG 
ATTGGCTTGC TGATCCGTAA CACCGACCAG AAGTCCAAGG ACTACTCGGC CATCAAGGAC 
CTGTTTCGGC CGGCCCATGC CGATTACACC TACCACCACA AATACGGCAT TCGCGACTAC 
CGCGGTGGGG GTCGCAGCTC GGCGCGGGAA ACCGCCATGC GCGTGGCGGC CGGGGCCATC 
GCCAAGAAGT ACCTGGCGAC CCAAGGCATT GTGATTCGCG GTTACATGAG CCAGCTCGGC 
CCGATCCAGA TCCCGTTCAA GACCTGGGAT TCGGTTGAGG ACAACGCTTT TTTCTGCCCA 
GACCCCGACA AGGTGCCAGA ACTGGAAGCC TACATGGACC AGCTGCGTCG CGATCAGGAC 
TCGGTCGGCG CGAAAATCAC GGTGGTGGCT GAAGGTGTCA TGCCCGGCCT TGGCGAGCCG 
ATCTTCGATC GCCTGGACGC CGAGCTGGCC CACGCGCTGA TGAGCATCAA TGCGGTCAAG 
GGCGTGGAAA TCGGTGCCGG TTTCGACTGC GTCGCGCAGC GCGGCACCGA GCATCGCGAC 
GAGATGACAC CGCAGGGTTT TCTGTCCAAT CAGGCGGGCG GCATTCTCGG CGGTATCTCC 
TCCGGCCAGC CGATCATTGC GCACCTGGCG CTCAAGCCGA CGTCGAGCAT CACGACGCCG 
GGGCGCTCGA TCGATGTCGA TGGCAACGCT GCCGACGTGA TCACCAAAGG GCGACATGAC 
CCGTGTGTCG GCATTCGTGC CACGCCGATC GCCGAAGCGA TGATGGCCAT CGTGCTGCTG 
GATCACCTGC TGCGTCATCG CGGGCAAAAC GCCGATGTCA GCGTCGCCAC ACCTGTGCTG 
GCCCAGCTGT AA 

 

Protein sequence

MSGNTFGKLF TVTTAGESHG PALVAIVDGC PPGLELDLQD LQRDLDRRKP GTSRHTTQRQ 
EADEVEILSG VFEGKTTGAS IGLLIRNTDQ KSKDYSAIKD LFRPAHADYT YHHKYGIRDY 
RGGGRSSARE TAMRVAAGAI AKKYLATQGI VIRGYMSQLG PIQIPFKTWD SVEDNAFFCP 
DPDKVPELEA YMDQLRRDQD SVGAKITVVA EGVMPGLGEP IFDRLDAELA HALMSINAVK 
GVEIGAGFDC VAQRGTEHRD EMTPQGFLSN QAGGILGGIS SGQPIIAHLA LKPTSSITTP 
GRSIDVDGNA ADVITKGRHD PCVGIRATPI AEAMMAIVLL DHLLRHRGQN ADVSVATPVL 
AQL