Gene PSPTO_2026 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2026 
Symbol 
ID1183671 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp2213388 
End bp2214752 
Gene Length1365 bp 
Protein Length454 aa 
Translation table11 
GC content60% 
IMG OID637393404 
Productethanolamine permease family protein 
Protein accessionNP_791849 
Protein GI28869230 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1113] Gamma-aminobutyrate permease and related permeases 
TIGRFAM ID[TIGR00908] ethanolamine permease 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.169235 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCACGC AACTCAAGCC TACGCTAGGC ACGATACATC TATGGGGGAT TGCCGTCGGG 
CTGGTGATCT CCGGCGAATA CTTCGGCTGG AGTTACGGCT GGGGGGCAGC CGGGACCCTG
GGCTTTTTGG TAACGGCCCT GATGGTTGCA ACCATGTACA CCTGTTTCAT ATTCAGTTTT
ACCGAACTGA CCACCGCCAT TCCTCACGCA GGCGGGCCGT TTGCCTACAG CCGCCGCGCC
TTCGGAGAAA AAGGCGGGTT GATCGCCGGC ATGGCGACCC TGATCGAATT CGTCTTTGCG
CCACCGGCCA TCGCCATGGC CATTGGTGCC TATCTCAACG TTCAGTACCC GGGCCTTGAC
CCCAAACACG CGGCGGTCGG TGCCTATATC GTGTTCATGG CGCTCAATAT CGTAGGCGTG
AAACTGGCTG CAACCTTTGA ACTGGTGGTG TGCATCCTCG CAGTCGCCGA GTTGCTGGTG
TTCATGGGCG TGGTCGCGCC AGCCTTCAGC TTCAGCAATT TTGCCCTCAA TGGCTGGGCG
GGCTCGCAGA CTTTCGGGCC GCAAGCCATC GCCGGCATGT TCGCCGCCAT CCCGTTTGCC
ATCTGGTTTT TCCTGGCCAT CGAAGGCGCG GCAATGGCTG CCGAAGAAGC CAAGGACCCG
AAACGTACCA TCCCCAAAGC CTACATCAGC GGCATTCTGA CTTTGGTGTT TCTGGCCATC
GGCGTCATGC TGTTTGCCGG CGGGGTCGGT GACTGGCGCA CCTTGGCCAA CATCAACGAC
CCGCTGCCAC AGGCCATGAA GGCGGTGGTC GGTGACAACT CCGGCTGGCT GCACATGCTG
GTGTGGATTG GCCTGTTCGG CCTGGTAGCC AGCTTCCACG GCATCATCAT GGGCTACTCG
CGGCAGTTCT TCGCCCTGGC CCGCGCCGGT TACCTGCCTT CGTCACTGGC CAGACTGTCA
CGCTTTCAGA CCCCGCACCG GGCAATCATC GCGGGCGGCC TTATCGGTAT CGCCGCCATC
TACAGTGACG GCCTGATCAA TCTGAGCGGC ATGACGCTGA CCGCTGCAAT GATCACCATG
GCGGTGTTCG GGGCCATCGT CATGTACATC ATGAGCATGC TCAGCCTGTT CAAACTGCGC
AAGACCGAAC CGAATCTGGA ACGCAGCTTC CGTGCGCCTG GCTACCCTGT GGTGCCTGGC
ATTGCGCTGG CGCTGGCAGT CGTGTGCCTG GTGGCAATGG CCTGGTTCAA CATGCTGATC
GGCGTGATTT TTCTGGGTCT GATGGCCATC GGGTTCATCT ATTTCAGTCT GACGGCCAAA
TCGCGCGCCG ATGCACCGGC CGATTCGATG CTTACCGGCC AGTAA
 
Protein sequence
MSTQLKPTLG TIHLWGIAVG LVISGEYFGW SYGWGAAGTL GFLVTALMVA TMYTCFIFSF 
TELTTAIPHA GGPFAYSRRA FGEKGGLIAG MATLIEFVFA PPAIAMAIGA YLNVQYPGLD
PKHAAVGAYI VFMALNIVGV KLAATFELVV CILAVAELLV FMGVVAPAFS FSNFALNGWA
GSQTFGPQAI AGMFAAIPFA IWFFLAIEGA AMAAEEAKDP KRTIPKAYIS GILTLVFLAI
GVMLFAGGVG DWRTLANIND PLPQAMKAVV GDNSGWLHML VWIGLFGLVA SFHGIIMGYS
RQFFALARAG YLPSSLARLS RFQTPHRAII AGGLIGIAAI YSDGLINLSG MTLTAAMITM
AVFGAIVMYI MSMLSLFKLR KTEPNLERSF RAPGYPVVPG IALALAVVCL VAMAWFNMLI
GVIFLGLMAI GFIYFSLTAK SRADAPADSM LTGQ