Gene PSPTO_2011 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2011 
Symbol 
ID1183656 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp2196049 
End bp2198358 
Gene Length2310 bp 
Protein Length769 aa 
Translation table11 
GC content56% 
IMG OID637393389 
Productautotransporter, putative 
Protein accessionNP_791834 
Protein GI28869215 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3468] Type V secretory pathway, adhesin AidA 
TIGRFAM ID[TIGR01414] outer membrane autotransporter barrel domain 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTGTCTT ATAGAAAAAG TAACGTTAGA AATTTCAGGT CCTGTATTTT GCAGTTTTCC 
GTACTGGCAG CCGGAGCTTT GGTAGCTGCT CAGGTGTCTG CAGATATTCA ACGCAAAGTG
AATGCCGGGT ATCAGGGTGA CGAAAAAATT GCGGTCATTC TGCCCAATGG AGAAGTGCTA
AAGGCCATAC CGATAAATGG TGATTCAGTA ACGGTGGGGC CTCAGACACC TTTTGATTCA
TACGTCGTGA GCAATAGAGG TGTTCTCAAT GTTAATGGCG GAAGAGTCGG TACGGTCTAC
GCAACACAGT CCACAGTTAA TATAGAGTCC GGGAGCGTGG AGAATGGTCT GCACCTCACC
GACAGTGTGT CTAACATTCA CGGCGCCGTG GTAAGCAATG ATTCAGGTTT CGGTATCTCT
CTGGGCGGAA TCATAGATTC TGATAAACCT GGCTCCGAAG CCTCTATTTT TTCGAGCAAT
GTATCTGGAC TGGAAGTGGG TATTGCAGTA GGTCTGTGGG GTGAGCTGAA TTTGGTTAAC
ACGGAGCTGC ATGGGGCAGC GTCGCAACGT GGGAGAGGTC AAGGTATTCT TTCTTCTGGA
GGAAATGTTT TTATTACCCA GCGTAGTCAC GTCATGGGTG ATCTGAACGG CATCAATATT
ACTGACGGCT CGGCTCGGGG GAGTTCGGAC GGAAGTCTGA TTGGAAATAA ACCCTACACG
GTTATCAATG ACTCTATTGT TGAGGGCTTG ACTGGCGCTG CTATCAGAGT CGACCAACGT
GTATTGTTTG ATATTGATGC CGATATCGCT GTGCAGAACC ATTCCGAGTT GCTGTCCGGG
AACGGGAACC TGCTGGAGGT TGCAGATAGC AGTACCGTCA ACTTCAACGT CGACAACAGC
ACCCTCAACG GCAACCTCGT CGCTGATGAC ACCAGCACCT TGAACGTCAC ACTGCAAAAT
GGCGCGCAAT TGAACGGTGA CATCATCAAT GGCAATACGC TGGCGATCAC TTCCGGTGGG
CAATGGCAGA TGCAGGGTGA CAATGCCGTC ACGTCGCTCT CCATGCAGGG AGGCAGCGTC
GGGTTTGGCG GGGAGGGGTT CCATACCTTG TCGCTGAATG AGTTGTCCGG GTCGGGCACG
TTCGGCCTGC GCGTGGACCT GGATAACGCG GTGGGTGATC TCATCAACGT CAATGGTCAG
GCCAGCGGGC AATTCGGATT GCGGGTGCGC AACACCGGGG TGGAGGTGAT ATCGGCTGAT
ATGCAGCCGC TCAAGGTGGT GCACACCGAA GGTGGCGATG CGCAGTTCAG CCTGCTGGGC
GGGCGGGTCG ATCTGGGGGC TTATTCCTAT CTGCTGGAGC AGCAAGGCAA TGACTGGTTC
GTTGTCGGCA GGGACAAGGT CATCAGCCCT TCGACCCAGA GTGCTCTGGC GCTGTACAGC
GCAGCGCCTG CCATCTGGAT GAGTGAGCTT TCTACCCTGC GTTCGCGCAT GGGCGAGGTT
CGTGCCAGCG GCCAGGCGGG TGGCTGGATG CGTGCATACG GCAGCCGTCT CAATGCCACG
ACCAGCGACG GGGTTGACTA CCGGCAGAAG CAGAGCGGCC TGTCGCTGGG TGCCGATGCG
CCTGTCGAGG TCAGCAACGG ACGGCTGCTG GTGGGTGTAC TGGGCGGTTA CAGCACGTCC
GATCTGGATG TGAGCCGCGG TACGACAGGT AAAGTTGCCA GTTATTACGC GGGCGCTTAC
GGCACCTGGT TGTCCGACGA CGGTTACTAC GTGGATGGCG TGCTCAAGCT CAACCGCTTT
CGCAACAAGG CAGATGTTGC CATGAGCGAT GCGAGCAAGG CCAAGGGCGA CTACAGCAAC
ACCGGTGTGG GTGGCTGGGT GGAAGCCGGT CGGCACATCA AGCTGGCGGA CGACTACTTT
CTCGAGCCGT TTGCCCAGTT GTCCAGCGTC GTCGTGCAGG GGCAGGAGCT GCGTCTGGAC
AACGGCATGA AGGCGAAGAA CGCGCGAACC CGTTCGGTAC TGGGCAAGGT CGGTACTTCG
CTGGGGCGCA CTGTGGCGCT CAAGGACGGC GGGGTGTTGC AGCCTTACGT GCGTGTCGCC
GTTGCTCAGG AATTTTCCCG CCGTAACGAG GTAAAGGCCA ACGACGTGAA ATTTGATAAC
AGCCTGTTCG GCTCGCGCGG CGAGCTGGGG GCCGGGGTAT CGGTTTCGCT GTCCGAGCGC
CTGAAACTGC ACGCGGACGT TGATTACATG AAAGGTCAGC ATATCGAGCA ACCCTGGGGG
GCTAATGTGG GACTACGTCT GACATTCTGA
 
Protein sequence
MVSYRKSNVR NFRSCILQFS VLAAGALVAA QVSADIQRKV NAGYQGDEKI AVILPNGEVL 
KAIPINGDSV TVGPQTPFDS YVVSNRGVLN VNGGRVGTVY ATQSTVNIES GSVENGLHLT
DSVSNIHGAV VSNDSGFGIS LGGIIDSDKP GSEASIFSSN VSGLEVGIAV GLWGELNLVN
TELHGAASQR GRGQGILSSG GNVFITQRSH VMGDLNGINI TDGSARGSSD GSLIGNKPYT
VINDSIVEGL TGAAIRVDQR VLFDIDADIA VQNHSELLSG NGNLLEVADS STVNFNVDNS
TLNGNLVADD TSTLNVTLQN GAQLNGDIIN GNTLAITSGG QWQMQGDNAV TSLSMQGGSV
GFGGEGFHTL SLNELSGSGT FGLRVDLDNA VGDLINVNGQ ASGQFGLRVR NTGVEVISAD
MQPLKVVHTE GGDAQFSLLG GRVDLGAYSY LLEQQGNDWF VVGRDKVISP STQSALALYS
AAPAIWMSEL STLRSRMGEV RASGQAGGWM RAYGSRLNAT TSDGVDYRQK QSGLSLGADA
PVEVSNGRLL VGVLGGYSTS DLDVSRGTTG KVASYYAGAY GTWLSDDGYY VDGVLKLNRF
RNKADVAMSD ASKAKGDYSN TGVGGWVEAG RHIKLADDYF LEPFAQLSSV VVQGQELRLD
NGMKAKNART RSVLGKVGTS LGRTVALKDG GVLQPYVRVA VAQEFSRRNE VKANDVKFDN
SLFGSRGELG AGVSVSLSER LKLHADVDYM KGQHIEQPWG ANVGLRLTF