Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2011 |
Symbol | |
ID | 1183656 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2196049 |
End bp | 2198358 |
Gene Length | 2310 bp |
Protein Length | 769 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637393389 |
Product | autotransporter, putative |
Protein accession | NP_791834 |
Protein GI | 28869215 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTGTCTT ATAGAAAAAG TAACGTTAGA AATTTCAGGT CCTGTATTTT GCAGTTTTCC GTACTGGCAG CCGGAGCTTT GGTAGCTGCT CAGGTGTCTG CAGATATTCA ACGCAAAGTG AATGCCGGGT ATCAGGGTGA CGAAAAAATT GCGGTCATTC TGCCCAATGG AGAAGTGCTA AAGGCCATAC CGATAAATGG TGATTCAGTA ACGGTGGGGC CTCAGACACC TTTTGATTCA TACGTCGTGA GCAATAGAGG TGTTCTCAAT GTTAATGGCG GAAGAGTCGG TACGGTCTAC GCAACACAGT CCACAGTTAA TATAGAGTCC GGGAGCGTGG AGAATGGTCT GCACCTCACC GACAGTGTGT CTAACATTCA CGGCGCCGTG GTAAGCAATG ATTCAGGTTT CGGTATCTCT CTGGGCGGAA TCATAGATTC TGATAAACCT GGCTCCGAAG CCTCTATTTT TTCGAGCAAT GTATCTGGAC TGGAAGTGGG TATTGCAGTA GGTCTGTGGG GTGAGCTGAA TTTGGTTAAC ACGGAGCTGC ATGGGGCAGC GTCGCAACGT GGGAGAGGTC AAGGTATTCT TTCTTCTGGA GGAAATGTTT TTATTACCCA GCGTAGTCAC GTCATGGGTG ATCTGAACGG CATCAATATT ACTGACGGCT CGGCTCGGGG GAGTTCGGAC GGAAGTCTGA TTGGAAATAA ACCCTACACG GTTATCAATG ACTCTATTGT TGAGGGCTTG ACTGGCGCTG CTATCAGAGT CGACCAACGT GTATTGTTTG ATATTGATGC CGATATCGCT GTGCAGAACC ATTCCGAGTT GCTGTCCGGG AACGGGAACC TGCTGGAGGT TGCAGATAGC AGTACCGTCA ACTTCAACGT CGACAACAGC ACCCTCAACG GCAACCTCGT CGCTGATGAC ACCAGCACCT TGAACGTCAC ACTGCAAAAT GGCGCGCAAT TGAACGGTGA CATCATCAAT GGCAATACGC TGGCGATCAC TTCCGGTGGG CAATGGCAGA TGCAGGGTGA CAATGCCGTC ACGTCGCTCT CCATGCAGGG AGGCAGCGTC GGGTTTGGCG GGGAGGGGTT CCATACCTTG TCGCTGAATG AGTTGTCCGG GTCGGGCACG TTCGGCCTGC GCGTGGACCT GGATAACGCG GTGGGTGATC TCATCAACGT CAATGGTCAG GCCAGCGGGC AATTCGGATT GCGGGTGCGC AACACCGGGG TGGAGGTGAT ATCGGCTGAT ATGCAGCCGC TCAAGGTGGT GCACACCGAA GGTGGCGATG CGCAGTTCAG CCTGCTGGGC GGGCGGGTCG ATCTGGGGGC TTATTCCTAT CTGCTGGAGC AGCAAGGCAA TGACTGGTTC GTTGTCGGCA GGGACAAGGT CATCAGCCCT TCGACCCAGA GTGCTCTGGC GCTGTACAGC GCAGCGCCTG CCATCTGGAT GAGTGAGCTT TCTACCCTGC GTTCGCGCAT GGGCGAGGTT CGTGCCAGCG GCCAGGCGGG TGGCTGGATG CGTGCATACG GCAGCCGTCT CAATGCCACG ACCAGCGACG GGGTTGACTA CCGGCAGAAG CAGAGCGGCC TGTCGCTGGG TGCCGATGCG CCTGTCGAGG TCAGCAACGG ACGGCTGCTG GTGGGTGTAC TGGGCGGTTA CAGCACGTCC GATCTGGATG TGAGCCGCGG TACGACAGGT AAAGTTGCCA GTTATTACGC GGGCGCTTAC GGCACCTGGT TGTCCGACGA CGGTTACTAC GTGGATGGCG TGCTCAAGCT CAACCGCTTT CGCAACAAGG CAGATGTTGC CATGAGCGAT GCGAGCAAGG CCAAGGGCGA CTACAGCAAC ACCGGTGTGG GTGGCTGGGT GGAAGCCGGT CGGCACATCA AGCTGGCGGA CGACTACTTT CTCGAGCCGT TTGCCCAGTT GTCCAGCGTC GTCGTGCAGG GGCAGGAGCT GCGTCTGGAC AACGGCATGA AGGCGAAGAA CGCGCGAACC CGTTCGGTAC TGGGCAAGGT CGGTACTTCG CTGGGGCGCA CTGTGGCGCT CAAGGACGGC GGGGTGTTGC AGCCTTACGT GCGTGTCGCC GTTGCTCAGG AATTTTCCCG CCGTAACGAG GTAAAGGCCA ACGACGTGAA ATTTGATAAC AGCCTGTTCG GCTCGCGCGG CGAGCTGGGG GCCGGGGTAT CGGTTTCGCT GTCCGAGCGC CTGAAACTGC ACGCGGACGT TGATTACATG AAAGGTCAGC ATATCGAGCA ACCCTGGGGG GCTAATGTGG GACTACGTCT GACATTCTGA
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Protein sequence | MVSYRKSNVR NFRSCILQFS VLAAGALVAA QVSADIQRKV NAGYQGDEKI AVILPNGEVL KAIPINGDSV TVGPQTPFDS YVVSNRGVLN VNGGRVGTVY ATQSTVNIES GSVENGLHLT DSVSNIHGAV VSNDSGFGIS LGGIIDSDKP GSEASIFSSN VSGLEVGIAV GLWGELNLVN TELHGAASQR GRGQGILSSG GNVFITQRSH VMGDLNGINI TDGSARGSSD GSLIGNKPYT VINDSIVEGL TGAAIRVDQR VLFDIDADIA VQNHSELLSG NGNLLEVADS STVNFNVDNS TLNGNLVADD TSTLNVTLQN GAQLNGDIIN GNTLAITSGG QWQMQGDNAV TSLSMQGGSV GFGGEGFHTL SLNELSGSGT FGLRVDLDNA VGDLINVNGQ ASGQFGLRVR NTGVEVISAD MQPLKVVHTE GGDAQFSLLG GRVDLGAYSY LLEQQGNDWF VVGRDKVISP STQSALALYS AAPAIWMSEL STLRSRMGEV RASGQAGGWM RAYGSRLNAT TSDGVDYRQK QSGLSLGADA PVEVSNGRLL VGVLGGYSTS DLDVSRGTTG KVASYYAGAY GTWLSDDGYY VDGVLKLNRF RNKADVAMSD ASKAKGDYSN TGVGGWVEAG RHIKLADDYF LEPFAQLSSV VVQGQELRLD NGMKAKNART RSVLGKVGTS LGRTVALKDG GVLQPYVRVA VAQEFSRRNE VKANDVKFDN SLFGSRGELG AGVSVSLSER LKLHADVDYM KGQHIEQPWG ANVGLRLTF
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