Gene PSPTO_2003 details

Gene Information

• Locus tag: PSPTO_2003
• Symbol: ccoO
• ID: 1183648
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 2185907
• End bp: 2186515
• Gene Length: 609 bp
• Protein Length: 202 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637393381
• Product: cytochrome c oxidase, cbb3-type, subunit II
• Protein accession: NP_791826
• Protein GI: 28869207
• COG category: [C] Energy production and conversion
• COG ID: [COG2993] Cbb3-type cytochrome oxidase, cytochrome c subunit
• TIGRFAM ID: [TIGR00781] cytochrome c oxidase, cbb3-type, subunit II

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACACG ATGTACTGGA AAAGAATATC GGTCTGCTGG CCTTTTTCAT GGTGATTGCC 
GTGAGCATCG GCGGGCTGAC TCAGATCGTC CCGCTGTTCT TTCAGGATGT GACCAATCAA 
CCAATCGAGG GCATGAAGCC GCGCAGCGCG CTGGAAGTCG AAGGCCGCGA TGTGTTCATT 
GCCAACGGTT GCGTGGGTTG CCACTCGCAG ATGATCCGCC CGTTACGCGC CGAAACCGAG 
CGCTACGGGC ATTACTCGGT CGCAGGCGAA AGTGTCTGGG ATCACCCGTT TCTGTGGGGC 
TCGAAACGCA CCGGGCCGGA CCTTGCGCGG ATCGGCGGTC GCTACTCGGA TGAGTGGCAC 
CGTGTGCACC TGAACAACCC GCGCGACCTG GTCCCTGCCT CGATCATGCC GGCCTATCCG 
TTTCTGGCCG GCAAACACAT CGACAGCACG CAGACCGCGA AAAAGCTGCA AGTGCTGCGC 
ACCCTTGGCA CGCCGTACAG CGACGCCGAT ATTACCGGTG CGGCGGCGGC CGTACAGGGC 
AAAACCGAAA TGGACGCGCT GGTGGCCTAC CTGCAAGGCC TCGGCACCCT TATCAAGAGC 
AAGCGGTGA 

 

Protein sequence

MKHDVLEKNI GLLAFFMVIA VSIGGLTQIV PLFFQDVTNQ PIEGMKPRSA LEVEGRDVFI 
ANGCVGCHSQ MIRPLRAETE RYGHYSVAGE SVWDHPFLWG SKRTGPDLAR IGGRYSDEWH 
RVHLNNPRDL VPASIMPAYP FLAGKHIDST QTAKKLQVLR TLGTPYSDAD ITGAAAAVQG 
KTEMDALVAY LQGLGTLIKS KR