| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1979 |
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| Symbol | fliA |
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| ID | 1183624 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 2164900 |
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| End bp | 2165640 |
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| Gene Length | 741 bp |
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| Protein Length | 246 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637393357 |
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| Product | motility sigma factor FliA |
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| Protein accession | NP_791802 |
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| Protein GI | 28869183 |
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| COG category | [K] Transcription |
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| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
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| TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.317165 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACTGCGA GCGGCTACCA GATGTACAGC AAAACCTCCC GTAATTCGCA GTACGAGTTG
ATCGAGCGTT ATGCGCCGCT GGTCAAGCGT ATCGCTTATC ATCTGCTGGC GCGCTTGCCG
GCCAGTGTGC AGGTCGAGGA TCTGATTCAG GCTGGTATGA TCGGCCTGCT CGAGGTTTCC
ACCAAGTATG ATTCCACCAA GGGTGCGAGT TTCGAGACCT ATGCCGGTAT TCGCATTCGT
GGTGCAATGC TCGATGAGGT TCGCAAGGGG GACTGGGCAC CTCGCTCGGT TCACCGCAAT
ACCCGTATGG TCAGTGACGC AATTCGCGCA ATTGAAGCTA AAACCGGTCG TGACGCTAAA
GATCACGAGG TTGCGGCCGA ACTCCAGTTG AGTCTTGATG ATTATTACGG GATTTTGAAT
GACACCTTGG GCAGCCGCCT CTTCAGTTTC GACGACCTGC TGCAGGACGG CGATCATGAA
GGGCTGCACG AGGACGGCGC AAGCGGTTCG CTTGAGCCAT CACGCGACCT GGAAGACGAG
CGCTTCCAGG CAGCGTTGGC CGATGCAATT GCCAATTTGC CAGAGCGCGA GCGTCTGGTG
TTGGCGCTGT ACTACGACGA AGAGCTGAAC CTCAAGGAAA TCGGAGAGGT TCTTGGTGTC
AGCGAATCTC GAGTCAGTCA GTTACACAGC CAGTGCGCAG CTCGTTTGCG AGGGCGTTTG
GGGGAGTGGC GAGCGCGTTG A
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| Protein sequence | MTASGYQMYS KTSRNSQYEL IERYAPLVKR IAYHLLARLP ASVQVEDLIQ AGMIGLLEVS
TKYDSTKGAS FETYAGIRIR GAMLDEVRKG DWAPRSVHRN TRMVSDAIRA IEAKTGRDAK
DHEVAAELQL SLDDYYGILN DTLGSRLFSF DDLLQDGDHE GLHEDGASGS LEPSRDLEDE
RFQAALADAI ANLPERERLV LALYYDEELN LKEIGEVLGV SESRVSQLHS QCAARLRGRL
GEWRAR
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