Gene PSPTO_1958 details

Gene Information

• Locus tag: PSPTO_1958
• Symbol: fliF
• ID: 1183603
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 2144684
• End bp: 2146468
• Gene Length: 1785 bp
• Protein Length: 594 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637393336
• Product: flagellar M-ring protein FliF
• Protein accession: NP_791781
• Protein GI: 28869162
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein
• TIGRFAM ID: [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.714595
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCGAAG CAACTGCCGA TACCGTTCCT GCAAGAGCGG GCGCTTCCGA TAAGAAACCG 
CTGTTCGGTT TGTCTTTTCT GGAAAATCTC TCTGAAATGA CCATGCTGCG TCAGATCGGC 
CTTATGGTCG GTCTTGCCGC GAGCGTGGCC ATCGGCTTTG CCGTGGTGCT CTGGTCCCAG 
CAACCTGACT ACCGTCCGCT TTATGGCAGC CTGGCGGGCA TGGACAGCAA GCAGATCATG 
GACACCCTGA CGGCGGCGAA CATCAACTAC ACCGTCGAGC CCAATTCCGG TGCGCTGCTG 
GTGAAGTCCG ATGACGTACA GCGTGCGCGT ATCCAGCTGG CGCAGGCGGG CGTGGTTCAG 
AACGACGCCA ATATAGGTTT TGAGATCCTC GACAAGGATC AGGGGCTGGG GACCAGTCAG 
TTCATGGAAG CCACGCGTTA TCGCCGTGGT CTGGAAGGCG AACTGGCTCG TACCATCTCC 
GCCCTGAACA ATGTCAAGGG TGCCCGTGTG CACCTGGCCA TTCCGAAAAG CTCGGTGTTT 
GTCCGCGACG ACCGCAAGCC CAGCGCTTCG GTATTGGTCG AACTGTATGC CGGCCGTTCG 
CTGGAACCCA GCCAGGTGCT GGCCATCATC AATCTGGTGG CCACCAGCGT ACCCGAGCTG 
AGCAAGTCGC AGATTACTGT AGTCGACCAG AAGGGCACGC TGCTGTCTGA TCAGGCGGAA 
AACTCCGAAC TGACCATGGC TGGCAAGCAA TTCGATTACA GCCGTCGTAT GGAAGGCATG 
CTGACCCAGC GCGTGCAGAA CATTCTGCAG CCGATTCTGG GCAATGATCG CTATAAGGCT 
GAAGTCTCGG CAGTGGTCGA TTTCAGCGCC GTCGAATCGA CCGCAGAAAG CTTCAACCCT 
GACCAGCCTG CCTTGCGCAG CGAGCAATCG GTCAACGAAC AACGTTCCAG CAGTTCAAGC 
ACCGGCGGTG TACCGGGGGC ATTGAGCAAC CAGCCACCGG GCCCTGCCAC CGCACCGCAA 
AATGCGGCGG CGGGTGCTGC CGGTGCGGCA GGCCCTATCG CTCCAGGCCA GCCGCTGCTG 
GATGCCAACG GTCAGCAGAT CATGGATCCG GCAACCGGTC AGCCAGCGTT GGCGCCATAC 
CCGGCCGACA AGCGCGTGCA ATCGACCAAG AACTTCGAGC TGGACCGCTC CATCAGCCAC 
ACCAAGCAAC AGCAGGGTCG TCTGACCCGC CTGTCGGTCG CGGTAGTGGT CGATGACATG 
GTCAAGACCA ACGCAGCCAA CGGCGAGGTT TCCCGTGCGC CGTGGAGCGC CGCGGACCTG 
GCCCGTTTCA CGCGTCTGGT ACAGGATGCC GTCGGTTTCG ACGCCAGCCG TGGTGACAGT 
GTCAGCGTAA TCAACGTGCC GTTCTCCAGT GAACGCGCCG AGGTTCTGCC TGAAGCGTCG 
TTCTATTCGC AACCGTGGTT CTGGGACATC GTCAAGCAGG CTGTGGGGGT GATCTTCATC 
CTGATCCTGG TGTTCGGTGT GCTGCGTCCG GTGTTGAACA ACATCACCAG CGGCAAGAGC 
AAGGAACTGG CCGGTTTCGG TGGCGACGCC GAACTGGGTG GCATGGGCGG TCTGGATGGC 
GAGTTGTCCA ATGACCGTGT CAGCCTGGGC GGCCCGCAAA GCATCCTGCT GCCTAGCCCT 
ACCGAGGGTT ATGACGCACA GCTGAACGCA ATCAAGAGCT TGGTGGCCGA AGACCCGGGT 
CGTGTGGCTC AGGTCGTGAA AGAGTGGATT AACACTGATG AATGA 

 

Protein sequence

MAEATADTVP ARAGASDKKP LFGLSFLENL SEMTMLRQIG LMVGLAASVA IGFAVVLWSQ 
QPDYRPLYGS LAGMDSKQIM DTLTAANINY TVEPNSGALL VKSDDVQRAR IQLAQAGVVQ 
NDANIGFEIL DKDQGLGTSQ FMEATRYRRG LEGELARTIS ALNNVKGARV HLAIPKSSVF 
VRDDRKPSAS VLVELYAGRS LEPSQVLAII NLVATSVPEL SKSQITVVDQ KGTLLSDQAE 
NSELTMAGKQ FDYSRRMEGM LTQRVQNILQ PILGNDRYKA EVSAVVDFSA VESTAESFNP 
DQPALRSEQS VNEQRSSSSS TGGVPGALSN QPPGPATAPQ NAAAGAAGAA GPIAPGQPLL 
DANGQQIMDP ATGQPALAPY PADKRVQSTK NFELDRSISH TKQQQGRLTR LSVAVVVDDM 
VKTNAANGEV SRAPWSAADL ARFTRLVQDA VGFDASRGDS VSVINVPFSS ERAEVLPEAS 
FYSQPWFWDI VKQAVGVIFI LILVFGVLRP VLNNITSGKS KELAGFGGDA ELGGMGGLDG 
ELSNDRVSLG GPQSILLPSP TEGYDAQLNA IKSLVAEDPG RVAQVVKEWI NTDE