Gene PSPTO_1948 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1948 
Symbol 
ID1183593 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp2134726 
End bp2135652 
Gene Length927 bp 
Protein Length308 aa 
Translation table11 
GC content54% 
IMG OID637393326 
Product3-oxoacyl-(acyl-carrier-protein) synthase III, putative 
Protein accessionNP_791771 
Protein GI28869152 
COG category[I] Lipid transport and metabolism 
COG ID[COG0332] 3-oxoacyl-[acyl-carrier-protein] synthase III 
TIGRFAM ID[TIGR00747] 3-oxoacyl-(acyl-carrier-protein) synthase III 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.621143 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTGGCA TTAAAAACAT AGCGAGTTAC GTGCCCACTG CTGGCGTTGA TAACTACGCT 
CAAGGTGCCA GTTTCGGCAA GGATGAAGAT TTCATCCTCG GGAAAATCGG TTCCACCTTC 
CTGCCGCGCA AAGACGCTGG CCAGGAAACC TCGGATTTGT GCGTTGAAGC GGCCAACACG 
TTGTTTGCCA ACAACCCGCA GCTCAAGCGC GAAAGCATCG ACGTACTGAT TGTCGTCACC 
CAGAACGGCG ACGAAGAAGG CCTGCCACAT ACCGCTGCCA TCGTTCAGGA CAAGCTGGGG 
CTGTCGACCA ACGTTGCCGC GTTCGACATT TCGCTGGGCT GTTCCGGGTA TGTCTATGGC 
ATTTATGCAA TCAAGGGCTT CATGGAAGCC GCAGGGCTGA AAAACGGCCT GCTGATCACC 
GCTGATCCGT ATTCGAAAAT CGTCGATCCG CAGGATCGCA ACACCACCAT GTTGTTTGGC 
GATGCAGCCA CGGCAACGTG GATGGGCGAG GGCGCTGCCT GGCAGTTGGG CAAGGCCAAA 
TTCGGCACCG ACGGTTCCGG TGCGCCGCAC CTCAAAGTGA GCAATGGCGT GTTTTTCATG 
AATGGTCGTC AGGTGTTCAA CTTTGCCTTG CTCAAGGTTC CCGCGCATTT GCATGAACTG 
CTGAGCGAGT CGGACCTGAC GCCGGACGAT ATCGATGCGT TCTGTATTCA TCAAGGCAGC 
GCTGCGATTG TCGATGCCGT TGCACGTCGC TTTGAAGACA AGCCCGAGAA GTTTCTCAAG 
GACATGGTCG AAACGGGTAA CACGGTGTCT TCCAGTATTC CATTGCTGAT TGAAAAGCAT 
GTGCTTAACT CTGACTGGAG TCGGGTTGCG CTGAGCGGTT TCGGTGTAGG CCTTTCCTGG 
GGTTCTGCAA TTATCTATAA AGCCTGA
 
Protein sequence
MIGIKNIASY VPTAGVDNYA QGASFGKDED FILGKIGSTF LPRKDAGQET SDLCVEAANT 
LFANNPQLKR ESIDVLIVVT QNGDEEGLPH TAAIVQDKLG LSTNVAAFDI SLGCSGYVYG 
IYAIKGFMEA AGLKNGLLIT ADPYSKIVDP QDRNTTMLFG DAATATWMGE GAAWQLGKAK 
FGTDGSGAPH LKVSNGVFFM NGRQVFNFAL LKVPAHLHEL LSESDLTPDD IDAFCIHQGS 
AAIVDAVARR FEDKPEKFLK DMVETGNTVS SSIPLLIEKH VLNSDWSRVA LSGFGVGLSW 
GSAIIYKA