Gene PSPTO_1935 details

Gene Information

• Locus tag: PSPTO_1935
• Symbol: flgD
• ID: 1183580
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 2114837
• End bp: 2115526
• Gene Length: 690 bp
• Protein Length: 229 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637393313
• Product: basal-body rod modification protein FlgD
• Protein accession: NP_791758
• Protein GI: 28869139
• COG category: [N] Cell motility
• COG ID: [COG1843] Flagellar hook capping protein

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCGTTG ATAGCACCTC AGCAAGCACC GTTTCATCGA CATTTCTGGA CAAGTTGCAG 
AACCCCACTG CTACCACGAC GAACTCTACC GGCACGCTGG GCAAAGACGC GTTCCTGCAG 
TTGCTCGTGA CCCAGATGAA GAACCAGAAC CCGCTGGACC CGCAGGACAA CACGCAGTTC 
GTGGCCCAAT TGGCGCAGTT CAGCAGCCTT GAAAGCATGC AGAACCTGAC CAAGACAGTT 
GACACGATTG CCTCCAGTTA TCAATCGTCG CAGGCCTTGC AGGCATCGTC GCTGGTCGGC 
CGCTCGGTCA TCATCGATTC GAGCTCCACC ACCGTGGATA CCACCAAGGG CATGACCGGT 
TCGATTGTCC TGCCGAGCGC CACTTCGGCG ACGAGTGTGA AGGTGTATGA CGCGCAATCG 
AACCTGGTCG ACACCGTCGA ACTGGGTGCG CAGAAAGCCG GCACCATCAG CTTCGCCTGG 
GACGGTACCG ACGGCGACGG TGCCGCGGTT GCGTCGGGCA ACTACACCTT CAAGGCTGAA 
GGTTCGGTTG ACGGCAAGAA CACACAGCTT TCGACTTACC TGCCTGCCAC GGTCAACAGC 
GTCACGTTGG GTGTGAATGG TGCAGAAACA ATGCTCAATC TGGCCAGCGG CAGTGTTGCC 
TTGTCCAAAG TTCAAACCAT CGGATTGTAG 

 

Protein sequence

MAVDSTSAST VSSTFLDKLQ NPTATTTNST GTLGKDAFLQ LLVTQMKNQN PLDPQDNTQF 
VAQLAQFSSL ESMQNLTKTV DTIASSYQSS QALQASSLVG RSVIIDSSST TVDTTKGMTG 
SIVLPSATSA TSVKVYDAQS NLVDTVELGA QKAGTISFAW DGTDGDGAAV ASGNYTFKAE 
GSVDGKNTQL STYLPATVNS VTLGVNGAET MLNLASGSVA LSKVQTIGL