Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1904 |
Symbol | |
ID | 1183549 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 2080595 |
End bp | 2084023 |
Gene Length | 3429 bp |
Protein Length | 1142 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637393282 |
Product | hypothetical protein |
Protein accession | NP_791727 |
Protein GI | 28869108 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.185676 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCCCGTTG CTGCGCAGAG AATTTCCCGC ATGACCGATA AAAACGGCAC CCATCGACAA CGACGTGCTG CACTGTTCCC CAAAACCCCG GCGACCGCCA CCAGCCTGTG CCCTTTCAGA GGGCCTAATA TCGCCATCGT CCCGGTGCGC TATGCGCTGG ATCGCTCGCG CTATGACGCT GACCCCACGC AACTGAAGCC ACTGCCCAAA GATGGCCAAT GGGCCCGCTT GCCGACGCTG AAAACACGCA GTTACACCTT GCGCCAACTG TACGACGGCT ACGTTTACGT GTTCGACGAG ACGGCCGGCA CGTTGCACGA ATACGCAGCC TCAGCCAGCG ACGGCCATCT GAGCCGCATC GTCTGGAGCG ATGCGCACAT CGGTAATGAC CAGCGAACCG GTGCCGATGA GGGACAACCC TTTCTGCTGT ATCCACGAGA GCACCGCCTG CACATCGCCT TTTCCCCGAT GCAGTGGACG TGGCGAATGT GCGAGCACAT GCGCTCCCAT GCCCCAAGCC GCGCGTTGTG GATGAAGGCG CTGGACCTGG CCAGCTACTG CCTCACCATG GCCGAGCCGG ACACCCTGCC GCTGGATCGC ATCGCCGAGG CCGTGGCGGA TATCGACAAA GACTGTGTTG TGGAAGATGG CCGTTTTGCA GATTCGGCGA TTCCCAGTGT TCGCCCGCCA TCAGAAGGCG CAGAACCCGA TCCGTTATGG GCACCGCTGG GCGCCGATGT CTTCTGGCAA GGCAGCGTCT ACGATCAGGA CAGCTCTCTG GTCATTGCCC TCGATGACCC GCTCGCCGTT TTCAACGACT TGGGCATGCA GCTGGCCGCC GATCAGGCGG CTTTTCGGGA ATGGCAAAGC GCCCACGAAC ACAAGATCCA GATTGCCCAG ACCGTCGCCA CGCTGTGCGG TGCAGAGAGC GAAGCAGAGA AGCTGCCGGC GTCGGTGCGT GGTGATGCGC TGCGCACGCA TCAGTACCTG AGCGAGGTCG AAGCCTACTT TGAACAATGC ATTCTTGAAG AAGCACAGAT CAGCAGTAGC AACGTTCCTG GAGATTTTCT GCTGCTGCCG GACATGTTCA AGAGCCTGGA CATGCGCAAA TCGATCGAAA CACGTTATGG CAGCGCGCCG ACCGATGAGG GCGCGCAGGC CTGGAAAGAT CGCCACAAAT GGCGGCGCGA GGTCGATCTG AGCAGTGCCC GCCAGTACCT TTTGCAGCAC CTGCCGACCG GAGACAAACG CCTGCAACAG GTGCGTGACA CGCAAAGCGA TTTCCAGCAC TGGGCGGCAC ATATAGGCAC CGAACCGCTC AAGCTGTTCA TCGACACCAC ACACCCGAAA ACCCTGCTGT ATTTGCAGAC GATCATGCTC AATCTGCAGA TCATCTATGC GCAGGACAGC GCCGCAAATG CCTGGCTGGC CGAGCAGGAA GCCAACACCA GCAGCCTGTT TGGCACCCTG CGTTATGGTT TTTCGCCAGC GCTCAAGCAC GCCCTGCATC AGGAAGCCGA CGCACTGCTG AACGGCCTCG GCGACGTCAC CAATCTGGCC ACGCGCATCG GTGAACTCAA TGGCGTGCTC AACCATCGGG GCTTTGCCGA CAAGCCGTGG ATGAAGGCGC TGAAACAGCC TGTTCAAGAC ACCTTCAAAG CCCTCGGCGA ACTGGCCAGC GGTGCCGGCA AAGCCAGGTT TGAAAGTGTA TTACTGGCAT GGGTGCCCAT CGACAGCCGC ATGGCCCTTG GCAAGCAGCA GAACATCGTT GCGTTGCTTC GCACCCTGCT GATCGGCCAG ATATTGCTCG ACTCGACAGC ACGCGTCGCG ATCAATGAGC AGACAGTGAC CAAGCTCAAA CAGTGGGTAA GTGAGTGGCA AGTCCTCAAC AAGCAAATCA GCGAGCTGGT GCGCAGTTGG CAATACCCGA ACGCCTACAA CACGCGCCAA AGCACCGCTC GCAAATTGCA GGCCCATAAA CACAAACTGC GCGTTCACGA ACTGAGCATC CCTGCCCTGC TCGACTTTCA GAACAACGAA TACGCCAAGC TATTGCAGGA CGAGATTCGC CAGTACTTCC AGTCCGGCAA AACCCTGGCC AAGGACTGGC TCGCCCGCGC CAGAGGCTGG ACCGACCGAC TGGGCGGCAC GGCAGGCTCG ATCACCTCGG GCGTGGTCAT GCTTAACCTT ATCAATACTG CCTTCCTCTA TCGGGACCTT ACCCGGGATG GGGATTTCAG TACCAAGGAC ATTGGCAAGG TGACGTATGG ATTGGGGTAC AGCTTCAATC TGTTGATGGC GGTGTTTGTT GAAGCGCCGT GGGCGATTAT CCGTACGGCC AAGCCACTGG TTATTGGCGG GTATGACGTG GGCATTCTTG ATAAGTCGGC AGCTTATTGG AAAGCACGGG GTAATGCAGT CTGGGGTGAT GCGATACGCG GGTTCAGGGG CTCGATGGTG GCGATGGGTG GGTTTGGGCT AGCGGCGGTT ACGCTTGAAC TATTTGATGT TATAGATGAT TTTTTCGCAG CGAAAACATC AGAGGAAACA TATGGGATTG GCATTAAGGG TTTTTCTGTA CTGGTGATGG GATTGGGGGC TGCCGCCCAG CTAATGGCAG GCATTTCCCC CGCTGGCGTC TTTACGATTA TCGCAATGAG TCCGTGGTTC AGCGTAGCTC TGCTGGCAAC TGGTTTTATT TATCTCCTTG CTACGATGGC ACTGAATTAC TTCAAGCAAG ACAGTGTCGG CTGGTGGCTA CGCAAGTGCT GTTGGTCCAG TACCTTAGAC TATCGCTACG CCGAGACTAC CGATGGCGAG CATGAAGAAG TGCGCGCGCT GATGGAAATT CAATTATCTC CGCAGGTTCA TGTAAAAAGC ACAGTGAATT ATGAAAATCG TTATCTTGGC AAAGGCGATT ATTACAGCGT AGCGGTACAA AATGGTGCTG GAGTACAAGT GCGATTGCCA AACGTGTTAC GCGGGCAGAC CGTGCATTTC AATGTCATCA GCAGCAAGCG ACCATTGGGC GTGCTGACTG TAGAAAAAAT AGACCAGCCA ATATATGAAG CTTTTTTGGA CCGCGGGCAA TTCAGGAACA CCGAACAGTT CGGGACGCTT ACCAACAAGC CTGCTGGCAA GGCGAGTGAA GACTTTACCT ACCCCCGCAT GCCACCTGAA AACGAAGACC TCATCTGGGA AACCTGGGTG CCGCTGGACA AGGACGCAAC GTATCTTGAG TTGCAAATCT GGTACCCGGC CAATTTTTTA AATCCTGGCG GAGACGATAG AAGCTATCTG TTTCAGATGG AGCTTGGTAT ACGAGGCGAT ACCGCTATTG ACGGCTTGGC TGCTGTGGAG CTCGAGGTAA AGGCATCAAG CAGGATTGGC GCTTTGACCC TGGAAGTCGC AGAGGGCACA CCTGTATGA
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Protein sequence | MPVAAQRISR MTDKNGTHRQ RRAALFPKTP ATATSLCPFR GPNIAIVPVR YALDRSRYDA DPTQLKPLPK DGQWARLPTL KTRSYTLRQL YDGYVYVFDE TAGTLHEYAA SASDGHLSRI VWSDAHIGND QRTGADEGQP FLLYPREHRL HIAFSPMQWT WRMCEHMRSH APSRALWMKA LDLASYCLTM AEPDTLPLDR IAEAVADIDK DCVVEDGRFA DSAIPSVRPP SEGAEPDPLW APLGADVFWQ GSVYDQDSSL VIALDDPLAV FNDLGMQLAA DQAAFREWQS AHEHKIQIAQ TVATLCGAES EAEKLPASVR GDALRTHQYL SEVEAYFEQC ILEEAQISSS NVPGDFLLLP DMFKSLDMRK SIETRYGSAP TDEGAQAWKD RHKWRREVDL SSARQYLLQH LPTGDKRLQQ VRDTQSDFQH WAAHIGTEPL KLFIDTTHPK TLLYLQTIML NLQIIYAQDS AANAWLAEQE ANTSSLFGTL RYGFSPALKH ALHQEADALL NGLGDVTNLA TRIGELNGVL NHRGFADKPW MKALKQPVQD TFKALGELAS GAGKARFESV LLAWVPIDSR MALGKQQNIV ALLRTLLIGQ ILLDSTARVA INEQTVTKLK QWVSEWQVLN KQISELVRSW QYPNAYNTRQ STARKLQAHK HKLRVHELSI PALLDFQNNE YAKLLQDEIR QYFQSGKTLA KDWLARARGW TDRLGGTAGS ITSGVVMLNL INTAFLYRDL TRDGDFSTKD IGKVTYGLGY SFNLLMAVFV EAPWAIIRTA KPLVIGGYDV GILDKSAAYW KARGNAVWGD AIRGFRGSMV AMGGFGLAAV TLELFDVIDD FFAAKTSEET YGIGIKGFSV LVMGLGAAAQ LMAGISPAGV FTIIAMSPWF SVALLATGFI YLLATMALNY FKQDSVGWWL RKCCWSSTLD YRYAETTDGE HEEVRALMEI QLSPQVHVKS TVNYENRYLG KGDYYSVAVQ NGAGVQVRLP NVLRGQTVHF NVISSKRPLG VLTVEKIDQP IYEAFLDRGQ FRNTEQFGTL TNKPAGKASE DFTYPRMPPE NEDLIWETWV PLDKDATYLE LQIWYPANFL NPGGDDRSYL FQMELGIRGD TAIDGLAAVE LEVKASSRIG ALTLEVAEGT PV
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