| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1902 |
|---|
| Symbol | bphP |
|---|
| ID | 1183547 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 2077622 |
|---|
| End bp | 2079859 |
|---|
| Gene Length | 2238 bp |
|---|
| Protein Length | 745 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637393280 |
|---|
| Product | bacteriophytochrome histidine kinase |
|---|
| Protein accession | NP_791725 |
|---|
| Protein GI | 28869106 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.333534 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAAC TCGACAAGGA CGCTTTTGAA GTCCTCCTGG CCAATTGTGC GGATGAGCCC
ATTCAGTTTC CCGGGGCCAT TCAGCCTCAT GGTCTGTTGT TCACGCTCAA AGAGCCTGAA
CTGACGATCC TGCAAGTCAG CGCCAATGTG CAGAGCGTGC TGGGCAAGGT TCCCGATCAA
CTTGCCGGGC AGACGCTGGA TTGCGTGTTA GGTGCAGGCT GGGCTGAAGT GATCAGAAGC
ACCAGTGCCA ACGATTCGCT CGTTGATGTG CCACGTTTAT TGATGTCGGT CGAAGGCGTC
GAGTTCGAGG CCTTGTTGCA CCGCAGCCAG GAGGCGCTGG TTCTGGAACT CGAAATTCAG
GACAAGGCGG CGCAGGCGAT CAGTTATTCC GAGCGCACCG GTAATATGGG GCGCATGTTG
CGTCAACTGC ATGCCGCCGC TGATTTGCAG ACGCTCTACG AAGTCAGTGT CCGTGAAATC
CAGAGGATGA CCGGCTACGA CCGGGTATTG ATCTATCGTT TTGAAGAGGA AGGTCACGGT
CAGGTGATCG CTGAAGCATC GGCACCGGCC ATGGAACTGT TCAACGGCTT GTTTTTCCCG
GCGTCGGACA TTCCCGAGCA GGCGCGCGAA CTATATCGCC GCAACTGGCT GCGCATCATT
CCCGATGCCA ACTACACGCC GGTGCCCCTG GTGCCGCAAT TGCGCCCGGA CACCCAGCAG
CAGCTTGACC TGAGTTTTTC GACACTGCGC AGCGTGTCGC CGATTCACTG CCAATACATG
AAAAACATGG GCGTGCTGTC GTCCATGAGT GTTTCGCTGA TTCAGGGCGG CAAGCTGTGG
GGCCTGATCA GTTGCGGGCA TCGCACGCCG CTGTACGTGT CCCATGAGCT GCGCAGCGCG
TGCCAGGCAA TTGGCCAGGT GCTGTCGTTG CAGATCAGCG CTATGGAAGC GCTGGAAGTC
AGCCGCCAGC GCGAGACCAA GATTCAGACC CTGCAGCAGT TGCATCAGAT GATGGCGACC
TCCGACACGG ACGTGTTCGA TGGCCTGGCG CAGCAGCCGC AGCTGTTGAT GGACCTGGTC
GGCGCCACCG GCGTCGCCAT CATCGAAGAC CGGCAAACAC ACTGCTACGG CAACTGCCCG
GAGCCGTCGG ATATCCGCGC GCTGCACACC TGGATGATGG CAGGCGGTGA GCCGGTGTAT
GCCAGTCATC ATCTTTCCAG TGTCTACCCG CCCGGCGAGG CCTATCAAAC GTTGGCCAGC
GGCGTGCTGG CCATGAGCCT GCCAAAGCCT GTGGATAACG GCGTGATCTG GTTTCGTCCG
GAGGTCAAGC AAAGTGTTCA GTGGAGCGGC GACCCGAACA AACCGCTGAA CCTGGACGCC
TCGGACAACA CTTTGCGTTT GCAGCCACGT ACGTCGTTCG AGATCTGGAA GGTCGAAATG
ACCGGGATCG CCACCAAGTG GAGCCACGGC GATGTGTTCG CCGCCAACGA CCTGCGCCGC
TCCGCACTGG AAAATGACCT GGCCCGGCAG GTCAGCAAGG AACAGCAGGC GGTGCGTGCT
CGCGATGAAC TGGTGGCGGT GGTGTCTCAC GACCTGCGCA ATCCGATGAC GGTCATCTCG
ATGCTGTGCG GCATGATGCA GAAGTCGTTC AGCTCCGACG GCCCGCACAC CTCGCGACGT
ATTTCCACGG CAATCGACAC CATGCAGCAA GCTGCCAGCC GCATGAACGT GTTGCTCGAG
GATTTGCTCG ACACCTCGAA AATCGAGGCC GGCCGCTACA CCATCACGCC GCAGCCGCTG
GAAGTCAGCC AGATATTCGA AGAGGCCTAT ACGCTGCTCG CCCCGTTGGC GATGGACAAG
TCCATCGAGA TTTCCTTCAA TGCCGAGCCC GACATCAAGG TCAATGCTGA CCCGGAGCGG
CTGTTCCAGG TGCTGTCCAA CCTGATCGGC AACGCGATCA AGTTCACCCC GAAACTGGGC
AGGATCGGTG TGGCGGCGAT GTCCAACGGC GACGAAGTGG TGTTTACCGT ACGCGATTCC
GGCGAGGGCA TCCCTCCTGA ACAGCTGCCA CACATCTTCG AGCGCTACTG GACCGTCAAG
GAAGGCAACC CGACCGGCAC CGGCCTGGGC CTGTATATCT CGCAAGGCAT CATCAAGGCC
CACGGCGGCG AACTAGCTGC GCAAAGCCAG GTTGGCCACG GCAGCGAGTT TCGCTTCACG
GTGCCGATCG CACATTGA
|
|---|
| Protein sequence | MSQLDKDAFE VLLANCADEP IQFPGAIQPH GLLFTLKEPE LTILQVSANV QSVLGKVPDQ
LAGQTLDCVL GAGWAEVIRS TSANDSLVDV PRLLMSVEGV EFEALLHRSQ EALVLELEIQ
DKAAQAISYS ERTGNMGRML RQLHAAADLQ TLYEVSVREI QRMTGYDRVL IYRFEEEGHG
QVIAEASAPA MELFNGLFFP ASDIPEQARE LYRRNWLRII PDANYTPVPL VPQLRPDTQQ
QLDLSFSTLR SVSPIHCQYM KNMGVLSSMS VSLIQGGKLW GLISCGHRTP LYVSHELRSA
CQAIGQVLSL QISAMEALEV SRQRETKIQT LQQLHQMMAT SDTDVFDGLA QQPQLLMDLV
GATGVAIIED RQTHCYGNCP EPSDIRALHT WMMAGGEPVY ASHHLSSVYP PGEAYQTLAS
GVLAMSLPKP VDNGVIWFRP EVKQSVQWSG DPNKPLNLDA SDNTLRLQPR TSFEIWKVEM
TGIATKWSHG DVFAANDLRR SALENDLARQ VSKEQQAVRA RDELVAVVSH DLRNPMTVIS
MLCGMMQKSF SSDGPHTSRR ISTAIDTMQQ AASRMNVLLE DLLDTSKIEA GRYTITPQPL
EVSQIFEEAY TLLAPLAMDK SIEISFNAEP DIKVNADPER LFQVLSNLIG NAIKFTPKLG
RIGVAAMSNG DEVVFTVRDS GEGIPPEQLP HIFERYWTVK EGNPTGTGLG LYISQGIIKA
HGGELAAQSQ VGHGSEFRFT VPIAH
|
|---|
| |