| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1871 |
|---|
| Symbol | |
|---|
| ID | 1183516 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 2045768 |
|---|
| End bp | 2047219 |
|---|
| Gene Length | 1452 bp |
|---|
| Protein Length | 483 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637393249 |
|---|
| Product | cytosine/purine/uracil/thiamine/allantoin permease family protein |
|---|
| Protein accession | NP_791694 |
|---|
| Protein GI | 28869075 |
|---|
| COG category | [F] Nucleotide transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1953] Cytosine/uracil/thiamine/allantoin permeases |
|---|
| TIGRFAM ID | [TIGR00800] NCS1 nucleoside transporter family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGACC AACGCCCGGC CGGATACAGC CCGCGCCTGC ACAACGACGA CCTGGGGCCG
GTGCCGCAGA AATGGACCTG GTACAACATT CTGGCGTTCT GGATGAGCGA CGTGCACAGC
GTCGGCGGTT ACGTGTTCGC CGCCAGCCTC TTCGCGCTTG GCCTGGCCAG TTGGCAGGTG
CTGATCGCCC TATTGGTCGG TATCTGCATT ATTCAGGTGA TTGCCAACCT GGTCGCCAAA
CCCAGCCAGC AAGCCGCCGT GCCCTACCCG GTGATTTGCC GTCTGGCCTT CGGCGTCTTC
GGCGCCAACA TCCCAGCCAT CATTCGCGGG CTGATCGCTG TGGCCTGGTA TGGCATTCAG
ACCTACCTGG CGTCCAGCGC CCTGGTGATT GTGGTGCTGC GTTTCTTCCC GGACCTGGCC
GCGTACCAGA GCGTGACCTT TCTTGGCCTG TCGTGGCTTG GCTGGTTCGG TTTTCTCGCG
CTGTGGGTGG TGCAGGCCGC GGTATTCTGG ACCGGCATGG AGTCGATCAG ACGCTTCATC
GACTGGGCCG GCCCTGCCGT TTACGCCGTG ATGTTCGCGC TGGCTGGCTG GATCGTCTGG
CGTGCCGGCT GGGAAAACAT CAGTTTTACC CTGGCGGAAA AAGAGCTGTC TGGCTGGGCT
GCGTTCGGCC AGGTGGTCAT GGCCATCGCG CTGGTGGTTT CGTATTTTTC CGGGCCAACC
CTGAACTTCG GTGATTTCAG CCGCTATTGC CGCAGCATGG CGGACGTGCG CCGGGGCAAC
TTCTGGGGCC TGCCGGTGAA TTTTCTGGCG TTCTCGCTGG TGACGGTGGT GATTGTCTCG
GGCACCCTGC CGATCTTCGG CGAAATGATC CACGACCCTA TCGCCACCGT CGCACGCATC
GACAACACCA CGGCAGTGCT GCTTGGCGCG TTCACCTTTG TAACCGCCAC CGTCGGCATC
AACATCGTCG CCAACTTCGT CTCCCCGGCC TTCGATTTCG CCAACGTGGC GCCCAGCCGC
ATCAGCTGGC GCGTGGGCGG CATGATTGCC GCCGTGGCGT CGATTTTCAT CACGCCCTGG
AACCTGTTCA ACAACCCTGA GGTAATCCAT TACACACTGG ACGTGCTGGC AGCCTGCATC
GGCCCGCTGT TCGGCATCCT GCTGGTGGAT TACTACCTGA TCAAGAAACA GCAGATTGAT
GTCGACGCGC TGTTCAACGA CACGCCGAGC GGCCGCTACT GGTACACCAA CGGCATCAAC
TGGATTGCCG TCAAAGCCTT GCTGCTGACG GCGCTGGTCG GCCTGTGCTT CACCTTCATC
GAGTGGTTCA AGCCGATTGC CAATTTCGCC TGGTTCACCG GCTGCATCCT CGGCGGTGCG
CTGTTTTATG CAATGACCCG CTGGTCGCCC GTGCAGTCGG CGAACATGCC GACACCCGTC
GCCCAGAGCT AG
|
|---|
| Protein sequence | MTDQRPAGYS PRLHNDDLGP VPQKWTWYNI LAFWMSDVHS VGGYVFAASL FALGLASWQV
LIALLVGICI IQVIANLVAK PSQQAAVPYP VICRLAFGVF GANIPAIIRG LIAVAWYGIQ
TYLASSALVI VVLRFFPDLA AYQSVTFLGL SWLGWFGFLA LWVVQAAVFW TGMESIRRFI
DWAGPAVYAV MFALAGWIVW RAGWENISFT LAEKELSGWA AFGQVVMAIA LVVSYFSGPT
LNFGDFSRYC RSMADVRRGN FWGLPVNFLA FSLVTVVIVS GTLPIFGEMI HDPIATVARI
DNTTAVLLGA FTFVTATVGI NIVANFVSPA FDFANVAPSR ISWRVGGMIA AVASIFITPW
NLFNNPEVIH YTLDVLAACI GPLFGILLVD YYLIKKQQID VDALFNDTPS GRYWYTNGIN
WIAVKALLLT ALVGLCFTFI EWFKPIANFA WFTGCILGGA LFYAMTRWSP VQSANMPTPV
AQS
|
|---|
| |