Gene PSPTO_1870 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1870 
Symbol 
ID1183515 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp2043345 
End bp2045420 
Gene Length2076 bp 
Protein Length691 aa 
Translation table11 
GC content60% 
IMG OID637393248 
Productsensory box histidine kinase/response regulator 
Protein accessionNP_791693 
Protein GI28869074 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCAATG ATGTTTCCGG CGGCAGATCG TTTGCCCCTC AAGTACCCCG TCCCTCGGCG 
CATGAAGCTG CTGAAAGGCT GCAACTCGCC CTGGATTCAG GCGCGGTTGC CGGCACGTGG
GTGTGGGACA TCATTGCTGA TCAACTGACC GGTGACGAGT GGTTTGCCCG CACATTCGGT
TTGTGCCCCA AGCTGTGCGC CAAAGGGTTG CCGCTGGCGT TGGTGACCGC GTCCATTCAC
CCGGACGACG CGCTCAGGGT CGACAAGGAT ATCGAGGAGG CGCTGTCCAA CGGCGATACC
TATCGATGCG AGTATCGGGT GCTTCATCAG GACGGTGTCT ATCGCTGGGT TGAAGCCAGT
GGCCGGATCG AGCGTGATGT TCAGGGCAAG CCGATTCGCA GCCCTGGTGT GCTGCTCGAC
ATAGACAGCC GACGCACTGC CGAGGCAGAG CGAGACCGTC TCAACGAACT GCTGCAGATA
TTCACCGCTG CCGTCCCGGG TGTCGTGTAT GCCAAGGATC TGGAAGGCCG AATGCTCGTC
GCCAACCGTG GCACCGCCGA ACTGGTCGGC AAGCCGCCGG AATTCTTCAT CGGCAAGACC
GATCTGGAGT TTCTGGATGA TGAGCAACAG GCGCGCGTCC TCATGGAAAC TGATCAGCGG
ATCATGCAGA GCAACGTCAG CGAACAGATA GAAGAGAAGG TCAATCTGGC GGATGGCTCC
GCTGCAATAT GGTTGTCCAC CAAGGCCCCG CTGCTCGATC GCAACGGCGA CGTTATCGGC
CTGATCGGCT CTTCCATCGA CGTAACGGCA CGAAAGAAAG CCGAAGAAGC GGTCAGGGAA
CTCAATCAGA CACTGGAACA ACGCATCGAG CAGGCCGTTT TCGAGCGTGA GCAGATCGAG
GATGCCCTGC GCCATTCGCA GAAGATGGAC GCCGTCGGGC AATTGACGGG TGGCATCGCA
CATGACTTCA ACAACCTGTT GGCCGGTATC TCGGGCAGCC TGGAACTGAT TACCAAACGA
CTGGCTCAGG GACGCGTCAG TGACGTGGAC CGTTATGTGT CAGTCGCCCA GGGCGCGGTG
CGTCGCGCAG CTTCACTGAC TCACCGCCTG CTGGCCTTTT CCAGGCGCCA GACCCTGTCG
CCGAGAGTGA CCGACGTAAA CGTGCTTATT CATGACATGG AAGAAATGAT CGCGCGCACG
GTCGGCCCGG AAATAGACAT CAAAGTGGTC GCCCAGAATG ATCTGTGGCC AGCCTTGATC
GACCATGCCC AACTGGAAAG CTCGCTGCTG AACCTGTGCC TGAATGCCCG TGATGCGATG
CCCAATGGCG GGCACATCGT CATTGAAACC GCAAACGCTT CGCTCGCCGA GTGTAACGAC
CCGGACCACG GCATTCCTGC CGGTGAACAC CTGAGCATCC GTATTACCGA CACCGGCAGC
GGCATGAGCC CGGCGATAGT CGCCAAGGCC TTCGAGCCAT TTTTCACCAC CAAACCCATT
GGTGCAGGTA CCGGCCTGGG ACTGTCGATG GTGTATGGTT TTGTACGCCA GTCCGGCGGG
CAGATCCGGG TTGAATCGGT CGAAGGCCAG GGCACCAGCG TGGTGATGCA CCTGCCGCGC
CATACGTCCG AAAGCACTCC GCGCGCGGCC GAACCCGAAG TCTTCGAAGA GCCGGCGCAT
CACACCGGTG AAACCGTACT CATCGTCGAT GACGAATCCT CCGTGCGGAT GCTCGTTGCC
GAAGTGATTA CCGGGCTGGG CTTCAACTGC CTGGAAGCAG CCGATGCTCA GGCCGGGCTG
CAGATTCTGC AATCCGACGC CCGCATCGAC CTGCTGATCA GCGACATAGG GCTGCCGGGT
GGTATGAATG GCCGCGAAAT GGCCGATGCC GCAGGCGATT GCCGACCCGG TCTGCCGACA
TTGTTCATCA CCGGCTACGC GAAAAGCTCC GTGCTGGACG ACTGCCACCT GCGGCCCTGC
ACGCAAGTAT TGACCAAGCC ATTCGGGCTG GACGCGCTCG CCGGACGAGT CACCGGGCTG
ATTGGCGCTG ACGCCGTGGC ACGGGGTTAT CAGTAG
 
Protein sequence
MSNDVSGGRS FAPQVPRPSA HEAAERLQLA LDSGAVAGTW VWDIIADQLT GDEWFARTFG 
LCPKLCAKGL PLALVTASIH PDDALRVDKD IEEALSNGDT YRCEYRVLHQ DGVYRWVEAS
GRIERDVQGK PIRSPGVLLD IDSRRTAEAE RDRLNELLQI FTAAVPGVVY AKDLEGRMLV
ANRGTAELVG KPPEFFIGKT DLEFLDDEQQ ARVLMETDQR IMQSNVSEQI EEKVNLADGS
AAIWLSTKAP LLDRNGDVIG LIGSSIDVTA RKKAEEAVRE LNQTLEQRIE QAVFEREQIE
DALRHSQKMD AVGQLTGGIA HDFNNLLAGI SGSLELITKR LAQGRVSDVD RYVSVAQGAV
RRAASLTHRL LAFSRRQTLS PRVTDVNVLI HDMEEMIART VGPEIDIKVV AQNDLWPALI
DHAQLESSLL NLCLNARDAM PNGGHIVIET ANASLAECND PDHGIPAGEH LSIRITDTGS
GMSPAIVAKA FEPFFTTKPI GAGTGLGLSM VYGFVRQSGG QIRVESVEGQ GTSVVMHLPR
HTSESTPRAA EPEVFEEPAH HTGETVLIVD DESSVRMLVA EVITGLGFNC LEAADAQAGL
QILQSDARID LLISDIGLPG GMNGREMADA AGDCRPGLPT LFITGYAKSS VLDDCHLRPC
TQVLTKPFGL DALAGRVTGL IGADAVARGY Q