| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1868 |
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| Symbol | hss |
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| ID | 1183513 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 2041244 |
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| End bp | 2042656 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637393246 |
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| Product | homospermidine synthase |
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| Protein accession | NP_791691 |
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| Protein GI | 28869072 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG5310] Homospermidine synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCACA AAGCGTTGTT CTCTGGAAAA CTGGTATTTA TCGGTTTTGG TTCCATCACC
AGAGCCACTC TCGGATTACT TGGCAACGTC CAGAGATTCG ACGTGTCCAG GATTGTCGTC
ATCGCACCGG GCATCAAGGG CTCTGAACCG TTCGTCAAGT CAGGGGTAAC CTTTATCGAT
CAGGCACTGA CGTCAGACAC AATGGAAAGC GTGTTGGGCA GCATTGTGGG GCAAGGTGAC
TTTATCGTTA ATCTTTCGGT TAATGTCTGC AGTGCCGACG TCATCCGATT TGCATACGCC
CACGATGCGC TGTACCTCGA TACGTGCATC GAGCCTTGGG GAAACACGTA CAACTCACCC
AGCCTGACAG CGTCGCAACG TTCTAACTAT GCGCTGCGTG ATCAGTTGCG TACGCTGGGT
GCAGAACTTG GCCCAGGGCC CACTGCGGTG GTGGCCCACG GTGCAAATCC GGGCTTGATA
TCACACTTTC TCAAGTGCGC ATTGTCAGCG CTTGCTGAAC AACTTTCGGT GGCTGTACCG
CGACATCAAG GGGGCATTGA TTGGGGCAAT CTGTCGATGA AGCTGGGCGT CAAGGTCATC
CACATTGCCG AGCGTGACAC TCAACGTTCA ACGCGTATCA AGTCCGATGG CGAATTCGTC
AACACCTGGT CTGTCGATGG ATTTGTCAGC GAGGCGGGAC AACCCGCCGA ACTGGGCTGG
GGCTCCCACG AAAAAAACTG GCCGCCCTTC GCCCGTCATC ATCAGTTTGG CTCTGACAAC
GCTATCTACC TTGATCGGCC CGGAGCTTGC GTGTCAGTCA AAACCTGGAC GCCCAACGGC
GGGCCTTGCA ACGCAATGTT GATCACGCAC AACGAAGCGA TCTCCATTCC TGAATTGCTG
ACCGTCAGAA ACGAAGGAGC GCTTAGTTAC CGCCCGACCG TGCACTATGC CTACCACCCG
TGTGACGATG CGTTGCTTTC AATCAATGAA TACACCGGGC GAGGATGGCA CGCGCAGGAC
CGTCAACGAA TCATGCTGGA TGAAATTACC CCAGGCGGTA TCGATGCACT GGGTGTATTG
ATCATGGGGC ATAAACTTAA TGCCTATTGG TACGGTTCGA TCCTGAACAT TGATGAGGCT
CGACGCCTCG CGCCCTTTAA TAATGCCACC AGCCTGCAAG TTGCAGCAGG CGTTTATTCG
GGCATTATCT GGGCCATCGA AAACCCTGAC CGGGGAATCG TCGAACCCGA ACAGATGGAT
CACCAGCGAG TCATGGAGAT CGCCCTGCCC TTTCTGGGTA AGTTCGGAGG CGTGTTGACT
GACTGGACAC CGTTGAAGAC TGGCAATGCG CTGTTCCGTA AACCCGACGC CGATGCCTGC
CCCTGGCAGT TCGAGCATTT CACGGCAGCG TGA
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| Protein sequence | MNHKALFSGK LVFIGFGSIT RATLGLLGNV QRFDVSRIVV IAPGIKGSEP FVKSGVTFID
QALTSDTMES VLGSIVGQGD FIVNLSVNVC SADVIRFAYA HDALYLDTCI EPWGNTYNSP
SLTASQRSNY ALRDQLRTLG AELGPGPTAV VAHGANPGLI SHFLKCALSA LAEQLSVAVP
RHQGGIDWGN LSMKLGVKVI HIAERDTQRS TRIKSDGEFV NTWSVDGFVS EAGQPAELGW
GSHEKNWPPF ARHHQFGSDN AIYLDRPGAC VSVKTWTPNG GPCNAMLITH NEAISIPELL
TVRNEGALSY RPTVHYAYHP CDDALLSINE YTGRGWHAQD RQRIMLDEIT PGGIDALGVL
IMGHKLNAYW YGSILNIDEA RRLAPFNNAT SLQVAAGVYS GIIWAIENPD RGIVEPEQMD
HQRVMEIALP FLGKFGGVLT DWTPLKTGNA LFRKPDADAC PWQFEHFTAA
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