Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1856 |
Symbol | |
ID | 1183501 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2030104 |
End bp | 2031066 |
Gene Length | 963 bp |
Protein Length | 320 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637393235 |
Product | transcriptional regulator, AraC family |
Protein accession | NP_791680 |
Protein GI | 28869061 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.922042 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAGTAA AGTCCATCCA ATTCATGACC TACCCTGAAG TTAGCCTGCT GGATCTGGCA GGCCCTCTGG ATGTGTTTAT TGCTGCCAAC CATCTGGCGC ACCCCGATCC TGCGCCATAC TCTTTATCCA TCCTCGCCTT AAGCCCGACG ACGGAGATAT TCTCTGATTT CTCGTTGAAC GCTGCGGTTT TGCTGAAGGA GACGCCTGCC GCGCACACAC TTATCGTGCC TGGCGGGCCC GGAATACATA AGTTTTGTGA TCACCCCCAA TTTTTTACAC ACTTTGTAAA ACATACCGAA AAAGTTACGC GTCTGGTCTC TGTGTGCACA GGGATATTTG CGCTGGCCAC CGCTGGAAAG TTGAATGGAC GAAACGTTAC TACCCATTGG TCGGCCTATG ACAAGCTGGA AAGTGACTTT CCTTCTGTCA AGGTAAGGCG CGGTCCTATA TTCATAAATG ATGGGGATTT ATGGACTTCA GCAGGTGTCA CTTCTGGAAT CGATTTGGCT CTTGCAATCG TTGAGGCGGA TTTGGGGCAT GCTGCTGCGC TCGAGGTTGC ACGGCATCTG GTTGTGTTTC TGAAACGCCC CGGGGATCAG AACCAGTTCA GCTCATCATT GACTCTGCAA TCCAAGAGCA GTCAGTTTTC AGACCTTCAT GCCTGGTTGA ACAACAACCT CAGTGGCGAT TTATCCGTGT CAGTGCTAGC AGATTTCATG AGCATGAGTG AAAGAACATT TGCGCGAAAA TACAGTGAAG TCACAGGCAG TACGCCAAGC AAAATGGTCG AGCAACTCCG CCTGGAAGCG GCTCGTCATT TGCTGGTCAC TTCAAGTGCT CCACTCAAGA CAGTCGCCAG CAAGTGCGGT TTGGGCAATG AATCAACCTT TATCCGTAGT TTTGTAAAAA ACTACGCTGT CACGCCCAGA GAATATAGAG AACGCTTCAA GTCACAGCGC TGA
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Protein sequence | MPVKSIQFMT YPEVSLLDLA GPLDVFIAAN HLAHPDPAPY SLSILALSPT TEIFSDFSLN AAVLLKETPA AHTLIVPGGP GIHKFCDHPQ FFTHFVKHTE KVTRLVSVCT GIFALATAGK LNGRNVTTHW SAYDKLESDF PSVKVRRGPI FINDGDLWTS AGVTSGIDLA LAIVEADLGH AAALEVARHL VVFLKRPGDQ NQFSSSLTLQ SKSSQFSDLH AWLNNNLSGD LSVSVLADFM SMSERTFARK YSEVTGSTPS KMVEQLRLEA ARHLLVTSSA PLKTVASKCG LGNESTFIRS FVKNYAVTPR EYRERFKSQR
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