| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1852 |
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| Symbol | |
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| ID | 1183497 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 2023987 |
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| End bp | 2026401 |
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| Gene Length | 2415 bp |
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| Protein Length | 804 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637393231 |
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| Product | mechanosensitive ion channel family protein |
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| Protein accession | NP_791676 |
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| Protein GI | 28869057 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3264] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0601787 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGCACG CTTCGCTGAA CCGTTTTTAT ACTGGGCTGC TGGCCTTGCT TTTGCTGTGC
GTGACTTTGC CAGCCTTGGC GCAAAATATT CCCGCTCCCC AGGCCGACAG CTCCAGCAGC
GCATCCCCGG CAGTGGACGC GCCAAGCCTG GATGACTTGA ATGAGCAGCT CGACCAGATC
CGCCAAAAGG TCGCGGCCAG CGCCAATGAT GACTTGCTAT CGGGCTTGCG GCAGGCCGCC
TTGCAGGTTC AGAAACAAGC CGACAATCTG ATTGCCCAGC AAGCTGTCGA CATCGAACAC
CTGAATGATC AGCTCAACAT TCTCGGGCCG GTGCAACCAG ACGAAGCGCA AAATCTGACC
AGTCAGCGCA AGACATTGAC CACTCAGAAA AACGCACTGG TCAATGATGA ACGTCAGACC
AATACCCTGA GCCAGTCGGC CCGGGATCTG GCTACACAGA TTTTCAACCT GCGCCGCAGC
CTGTTCGATT CACAGATCAG CACCCGCACC GCAAGCCCAC TCAGCTCGGC ATTCTGGTCC
ACCCTGATTC GCCCTACCGA TGACGACCTG GGACGCTTGA ACAGGCTGCT GGTAGACGTT
CGTCAGGTGC TCACCAGCGC ACTGGCACCG GGCAACCGCA TGCAGTTCAT CAGCATCGTG
TTTGGCGCGC TGTTGATATG GTTCGTTGTT CGGCGCTTGC TGGAGCGTCT GCTGATCTGG
TCAATGATCC GTTGGCTGCC TGAGGGCCGC CTGCGCCGCA GCGCCCTGGC ATTGGCCGTC
GGACTGTCGA CGATCCTTAC CATTACCGTT GCCACTTCCT TGCTGCGCTG GGGAATCGTG
AGCAATGCTG TGCTCAGCAA CGACGTGGTC AACCTGCTTG ATCAGGTGCA GACGCTGATC
ACCTTTTGCG CCTTCATTCT CGGCCTGGGC CGCGCCCTGC TGATGCTGCC GCACGCCTCA
TGGCGCCTGC CGCAAATTCC TGACGAGATC GCAACGGCCA TGGGCCGCAT CCCGGCCGTA
CTGGCGCTGG CACTCATGGT CATCGGCACA CAGGAGCGAA TCAACAGCGT GATAGCCAGC
AGCCTGGCGC TGACTGTGGC AGTCAATGGC CTGACGGCAT TGGCGGTGTC GCTGGTATTC
CTTTACGCCC TGGTGCGCTA CCGTCGAACC CGCCGAAGGT TTGGGCTGGA GCGCCTGGGC
GGCTTCGCCG GGCTGATCCC GTTCATCGTT ACAGTGTGGG TCGGGTTGAG CTTGCTGGCG
TTGGTGAGCG GCTACCTGAC GCTGGCTTAC TTCCTGGCGG TGAAACTGCT TTGGGTGAGC
GTGGTAGCGT CCACTGCGTA TCTGTTGATC GCTTGCTTCG GTGACATCTG CGAAACCCTG
CTGTCACCCA AACAACCTGG CGGCATGGCG CTGGGTTCCG CGCTGGGCTT GTCCGCCCGC
CATCAGGCTC AGGCAAGCAC CGTACTGGCG GGCATAGGCC GTACCTTGCT CCTGCTGACC
GCTGTGTTGC TGGCTTTCCT GCCCTCGGGT TCCAGCCCGG GCGATTTGCT CGCAAGTTTT
GCTCAATTGG ATGTCACCTC CAAATCGCTG GGCAATCTGA GCATCGTCCC CAGCGATATT
CTGATGGCAT TGGTTTGCCT GGTCGTGGGT CTGCTAGGTG TACGTGTGCT CAAGGAATGG
TTTGGAGAGC GCCTCCTGCC GGAAACCAAC ATGGATGCAG GGATGCAGGC CTCACTGGTG
ACCCTGATCG GTTACATCGG CTTTGTGTTG GTGGTGGCCG TGGTGATGTC CACGCTCAAG
ATCAGCCTGA CCAATTTGAC CTGGGTGGTC AGTGCGCTTT CGGTGGGGAT CGGTTTCGGC
CTGCAAGCCA TCGTGCAGAA CTTCATCTCC GGCTTGATTC TGCTGACCGA ACGTCCGGTT
AAAGTCGGGG ATTGGGTGAG CCTGGCTGGG GTCGAAGGCG ATATTCGCCG GATCAACGTA
CGTGCCACCG AAATCCAGAT GGGCGACCGC TCGACGGTGA TCGTGCCGAA CTCGCAGTTC
ATCACGCAAA ACGTGCGCAA CGTCACCATG GGCAATGCGC TGGGTGTAGT CGGAATCACG
CTGACCCTGC CTTTGGAAAC AGATGTCCTG CAAATACGCG AGTTGCTGTT GCAAGCCTTC
ACCGAGCACG AAGCGATACT CGACGCGCCA GCGCCTTCTG TCACGTTCAA AGACCTGACC
AACACAGGTT TGATTATCAG TGCCAGCGGT TACGTGAACA GCCCACGTTC GGTAGGTGGA
GCGCGGAGCG ATCTGTTGTT TACGGTGTTG GGGCGTCTGA GGGAGCTGGG TGTAGCGCTG
TCTGCGCCGC AGAGTATGGT GTTGATCAAT GAGGGGGCTG GGAAGGAGGC TACGGAAGAG
TCGGTGGCGC CTTAG
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| Protein sequence | MQHASLNRFY TGLLALLLLC VTLPALAQNI PAPQADSSSS ASPAVDAPSL DDLNEQLDQI
RQKVAASAND DLLSGLRQAA LQVQKQADNL IAQQAVDIEH LNDQLNILGP VQPDEAQNLT
SQRKTLTTQK NALVNDERQT NTLSQSARDL ATQIFNLRRS LFDSQISTRT ASPLSSAFWS
TLIRPTDDDL GRLNRLLVDV RQVLTSALAP GNRMQFISIV FGALLIWFVV RRLLERLLIW
SMIRWLPEGR LRRSALALAV GLSTILTITV ATSLLRWGIV SNAVLSNDVV NLLDQVQTLI
TFCAFILGLG RALLMLPHAS WRLPQIPDEI ATAMGRIPAV LALALMVIGT QERINSVIAS
SLALTVAVNG LTALAVSLVF LYALVRYRRT RRRFGLERLG GFAGLIPFIV TVWVGLSLLA
LVSGYLTLAY FLAVKLLWVS VVASTAYLLI ACFGDICETL LSPKQPGGMA LGSALGLSAR
HQAQASTVLA GIGRTLLLLT AVLLAFLPSG SSPGDLLASF AQLDVTSKSL GNLSIVPSDI
LMALVCLVVG LLGVRVLKEW FGERLLPETN MDAGMQASLV TLIGYIGFVL VVAVVMSTLK
ISLTNLTWVV SALSVGIGFG LQAIVQNFIS GLILLTERPV KVGDWVSLAG VEGDIRRINV
RATEIQMGDR STVIVPNSQF ITQNVRNVTM GNALGVVGIT LTLPLETDVL QIRELLLQAF
TEHEAILDAP APSVTFKDLT NTGLIISASG YVNSPRSVGG ARSDLLFTVL GRLRELGVAL
SAPQSMVLIN EGAGKEATEE SVAP
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