| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1842 |
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| Symbol | alaS |
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| ID | 1183483 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 2010440 |
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| End bp | 2013064 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637393217 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | NP_791666 |
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| Protein GI | 28869047 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.742593 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGCG CAGAAATCCG TGAAGCCTTC CTTGGCTTCT TCGAAGAGCA AGGCCACACC
CGTGTCCCTT CAAGCTCCTT GATTCCGGGC AATGACCCAA CCCTGCTGTT CACCAACGCA
GGCATGAACC AGTTCAAGGA TTGCTTCCTG GGCCAGGAAA AACGCGCCTA CACCCGCGCC
GTGACCAGTC AGAAATGCGT GCGTGCCGGT GGCAAGCACA ACGACCTGGA AAACGTCGGC
TATACCGCTC GTCACCACAC TTTTTTCGAA ATGCTGGGTA ACTTCAGCTT TGGTGACTAT
TTCAAGCGTG ATGCCATTAC CTACGCCTGG ACCTTCCTGA CTTCCGAGAA GTGGCTGAAC
CTGCCCAAGG AAAAACTCTG GGTCACCGTC TACGCGACCG ACGACGAAGC CTACGATATC
TGGACCAAAG AGATCGGCGT CCCGGCCGAA CGCATGGTTC GCATCGGTGA CAACAAAGGC
GCGCCTTACG CCTCCGACAA CTTCTGGACC ATGGGCGACA CCGGCCCGTG TGGCCCGTGC
AGCGAGATTT TCTTCGACCA CGGCGCGGAC ATCTGGGGTG GCCCGCCAGG CTCGCCGGAA
GAGGACGGCG ACCGTTACAT TGAAATCTGG AACAACGTTT TTATGCAGTT CAACCGTACC
GCTGATGGCG TGCTGCACCC GCTGCCAGCG CCGTCGGTCG ATACCGGCAT GGGTCTTGAG
CGGGTCAGTG CCGTTCTGCA GCACGTGCAT TCCAACTACG AAATCGACCT GTTTCAGAGC
CTGCTTACCG CATCGGCCAA TGCCATCGGT TGCAGCAACG ACAACCAGGC TTCGCTGAAA
GTCGTGGCTG ACCACATTCG TTCTTGCGGC TTCCTGATCG CCGATGGCGT ACTGCCTTCC
AGCGAAGGCC GTGGCTATGT GCTGCGCCGC ATCATTCGTC GCGCCTGCCG TCACGGTAAC
AAGCTCGGTG CCAAGGGCAG CTTCTTCTAC CAGATCGTCG CCGCGCTGGT CGCCGAGATG
GGTTCGGCAT TCCCTGAACT GGTGCAACAG CAGTCGCACA TCGAGCGCGT CCTCAGAGGC
GAAGAAGAGC AGTTCGCCAA GACTCTGGAA CAAGGCTTGA AGATCATCGA GCAGGATCTG
GCCGAGCTCA AAGGCACCGT GGTTCCCGGC GAAATCGTGT TCAAGTTGTA TGACACCTAC
GGTTTCCCGA TGGACCTGAC AGGTGACATC GCCCGTGAGC GTAACCTGAC GCTGGACGAA
GAGGGCTTTG AGCGCGAAAT GGAAGCCCAG CGCGTGCGTG CACGTTCGGC CAGCTCGTTC
GGCATGGACT ACAACAGTCT GGTCAAGGTC GATGTGGCCA CCCAATTCAC CGGTTACTCG
GCGACCACCG GCAGCGCCAG CGTCGTTGCC CTCTATAAAG ACGGGCAGTC GGTGACTCAT
CTGAACGCAG GCGAAGAGGG CGTGGTGATT CTCGACACCA CCCCGTTCTA TGCCGAATCA
GGTGGCCAGA TCGGCGACAG CGGCTTCCTG CTGGCTGGTG ATGCGCGCTT CGACGTCAGT
GACACCACCA AGACCGGCGG GGCATTCCTG CACCACGGTG TTGTGGCGTC CGGCAGCCTG
AGCGTCGGCG TACAGGTTGA AACACAGGTG GCCGATGAAG TTCGTGATGC AACCAAACTG
AACCATTCGG CCACTCACTT GCTGCACGCC GCATTGCGTC AAGTGCTGGG CGAGCACGTG
CAGCAGAAGG GCTCGCTGGT CGACAGTCAG CGTCTACGCT TTGACTTCAG CCACTTCGAG
TCGATCAAGC CTGAGCAACT GCGTGCACTG GAAGACATCG TCAACGCCGA AATTCGCAAG
AACACGCCGG TGGTCACCGA AGAAACCGAC ATCGACACCG CGAAAAAGAA AGGCGCCATG
GCGCTGTTCG GCGAGAAGTA CGGTGACAGC GTTCGTGTGC TGAGCATGGG CGGCGAGTTC
TCCGTCGAGC TGTGCGGCGG TATTCACGCC AGCCGCACCG GTGACATCTC GTTGTTCAAG
ATTGTCAGTG AAGGCGGCGT TGCCGCAGGC GTGCGCCGTA TCGAAGCGGT GACCGGCGCG
GCTGCGCTGG CCTGGCTGAA CTCGGCTGAA GATCAACTCA AGGAAGCCGC GACGCTGGTC
AAAGGCAATC GCGACAACCT GCTGGACAAG CTGACGGCGG TGCTTGAGCG CAACCGTCTG
CTGGAAAAAC AACTGGAACA ACTGCAAGCC AAGGCAGCCA GCGCCGCCGG TGACGACCTG
TCGTCGGCCG CGCTGGATGT CAAAGGGGTC AAGGTTCTGG CTACGCGCCT GGATGGCCAG
GACGGCAAGG CGCTGTTGGC GCTTGTCGAC CAGTTGAAGA ACAAGCTCGG CCGCGCAGTG
ATCCTGCTCG GCAGTGTTCA TGAAGACAAG GTTGTCTTGG TCGCAGGCGT GACCAAGGAC
CTGACTGGCC AACTCAAAGC CGGTGATTTG ATGAAACAGG CGGCAACCGC AGTAGGCGGT
AAAGGCGGTG GTCGTCCTGA TATGGCTCAA GGCGGTGGTG TCGATGCAAC TGCGCTGGAT
TCAGCGCTGG CACTGGCCGT TCCTTTTGTA GAGCAGGGTA TCTGA
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| Protein sequence | MKSAEIREAF LGFFEEQGHT RVPSSSLIPG NDPTLLFTNA GMNQFKDCFL GQEKRAYTRA
VTSQKCVRAG GKHNDLENVG YTARHHTFFE MLGNFSFGDY FKRDAITYAW TFLTSEKWLN
LPKEKLWVTV YATDDEAYDI WTKEIGVPAE RMVRIGDNKG APYASDNFWT MGDTGPCGPC
SEIFFDHGAD IWGGPPGSPE EDGDRYIEIW NNVFMQFNRT ADGVLHPLPA PSVDTGMGLE
RVSAVLQHVH SNYEIDLFQS LLTASANAIG CSNDNQASLK VVADHIRSCG FLIADGVLPS
SEGRGYVLRR IIRRACRHGN KLGAKGSFFY QIVAALVAEM GSAFPELVQQ QSHIERVLRG
EEEQFAKTLE QGLKIIEQDL AELKGTVVPG EIVFKLYDTY GFPMDLTGDI ARERNLTLDE
EGFEREMEAQ RVRARSASSF GMDYNSLVKV DVATQFTGYS ATTGSASVVA LYKDGQSVTH
LNAGEEGVVI LDTTPFYAES GGQIGDSGFL LAGDARFDVS DTTKTGGAFL HHGVVASGSL
SVGVQVETQV ADEVRDATKL NHSATHLLHA ALRQVLGEHV QQKGSLVDSQ RLRFDFSHFE
SIKPEQLRAL EDIVNAEIRK NTPVVTEETD IDTAKKKGAM ALFGEKYGDS VRVLSMGGEF
SVELCGGIHA SRTGDISLFK IVSEGGVAAG VRRIEAVTGA AALAWLNSAE DQLKEAATLV
KGNRDNLLDK LTAVLERNRL LEKQLEQLQA KAASAAGDDL SSAALDVKGV KVLATRLDGQ
DGKALLALVD QLKNKLGRAV ILLGSVHEDK VVLVAGVTKD LTGQLKAGDL MKQAATAVGG
KGGGRPDMAQ GGGVDATALD SALALAVPFV EQGI
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