| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1828 |
|---|
| Symbol | |
|---|
| ID | 1183469 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1996431 |
|---|
| End bp | 1997129 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637393203 |
|---|
| Product | arginine/ornithine ABC transporter, permease protein |
|---|
| Protein accession | NP_791652 |
|---|
| Protein GI | 28869033 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4160] ABC-type arginine/histidine transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCTTTG ACTACAACGT GATCTGGGAC AGCCTGCCGC TGTACTTTGG CGGTCTGCTG
ACCACCCTCA AATTGCTGGC GATTTCCCTC GCTTTCGGAC TGCTCGCGGC GCTGCCGCTG
GGCCTGATGC GGGTCTCGAA AAAACCGTGG GTGAACGTGC CGGCCTGGCT GTACACCTAC
GTGATTCGCG GCACACCGAT GCTGGTGCAG TTGTTTCTGA TCTACTACGG CCTGGCTCAG
TTTGCGGCGG TGCGCGAGAG CTTTTTGTGG CCGTGGCTGT CCAGCGCAAC CTTCTGCGCC
TGCCTGGCCT TCGCTATCAA TACCAGCGCC TACACGGCCG AGATCATTGC CGGCAGCCTC
AAGGCCACGC CGGCCGGCGA AATCGAGGCG GCGCGGGCCA TGGGCATGTC GAAGGTGAAA
ATGTATCGGC GCATTCTGCT GCCGTCGGCC CTGCGTCGGG CGCTGCCGCA GTACAGCAAC
GAGGTGATCA TGATGCTGCA GACCACCAGT CTGGCCTCTA TCGTCACCCT GATCGACATC
ACCGGTGCGG CGCGCACGGT CAATGCGCAG TTCTACCTGC CTTTCGAGGC CTACGTCACC
GCAGGCGTTT TCTATCTATG CCTGACATTC ATTCTGGTGC GGCTGTTCAA GATCGCCGAA
CGCCGCTGGC TGGGCTATCT CGCCCCACGG AAGGTCTGA
|
|---|
| Protein sequence | MIFDYNVIWD SLPLYFGGLL TTLKLLAISL AFGLLAALPL GLMRVSKKPW VNVPAWLYTY
VIRGTPMLVQ LFLIYYGLAQ FAAVRESFLW PWLSSATFCA CLAFAINTSA YTAEIIAGSL
KATPAGEIEA ARAMGMSKVK MYRRILLPSA LRRALPQYSN EVIMMLQTTS LASIVTLIDI
TGAARTVNAQ FYLPFEAYVT AGVFYLCLTF ILVRLFKIAE RRWLGYLAPR KV
|
|---|
| |