| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1813 |
|---|
| Symbol | |
|---|
| ID | 1183454 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1981703 |
|---|
| End bp | 1982476 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637393189 |
|---|
| Product | conserved hypothetical protein TIGR00281 |
|---|
| Protein accession | NP_791638 |
|---|
| Protein GI | 28869019 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1386] Predicted transcriptional regulator containing the HTH domain |
|---|
| TIGRFAM ID | [TIGR00281] segregation and condensation protein B |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTCA ACGAACCCCG CGAACTGGCC CCGTTGCTTG AAGCGTTTCT GCTGGCCTCC
GGAAAACCGC AGACTCTGGA GCGGCTTTAC GAGCTGTTTG AAGAAGGCGA GCGTCCCGAG
CCACCGGTGT TCAAGAAGGC GCTGGAAGTG CTGCGCAAAT CCTGCGAGGG GCGTGCGTTT
GAACTCAAGG AAGTCGCTTC GGGTTATCGC CTGCAGATTC GTGACCGGTT TTCACCCTGG
GTCGGACGGC TGTGGGAAGA GCGGCCGCAG CGTTACTCCC GCGCCATGCT GGAAACCCTG
GCCTTGATTG CTTATCGCCA GCCGATCACC CGTGGCGAAA TCGAAGACGT GCGCGGCGTT
GCGGTGAACA GCCACATCGT CAAGACCTTG CTGGAGCGCG AGTGGATCCG CGTGGTGGGT
TACCGCGACG TGCCTGGCAA ACCGGCGATG TTTGCCACCA CCAAGGGTTT TCTGGACCAC
TTCAACCTCA AAAGCCTCGA CGAACTGCCG CCGCTGGCTG ACCTGCGCGA GATGGAAACC
GAGCCCGTCC TGGATTTCGA AGACGCCCCG GTGCCTGCGC ACCTGCAAGC CCTGGCCGAC
GCCAGCCTCG ACCCGGACGC AGAACCCGAA GCCCCTCGCG ACGAAACCAG CTTCCGCACC
TTGTTGGTCG AACTGGACTC GATGGAACAA GGCCTCAAGA CCGACTTCGA CGACCTGCTG
CGCGCGGAGC CTGAGCCTGA GGAAGGCGAT GAGGAAAAAG GCTCCGGGGC CTGA
|
|---|
| Protein sequence | MNLNEPRELA PLLEAFLLAS GKPQTLERLY ELFEEGERPE PPVFKKALEV LRKSCEGRAF
ELKEVASGYR LQIRDRFSPW VGRLWEERPQ RYSRAMLETL ALIAYRQPIT RGEIEDVRGV
AVNSHIVKTL LEREWIRVVG YRDVPGKPAM FATTKGFLDH FNLKSLDELP PLADLREMET
EPVLDFEDAP VPAHLQALAD ASLDPDAEPE APRDETSFRT LLVELDSMEQ GLKTDFDDLL
RAEPEPEEGD EEKGSGA
|
|---|
| |