| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1786 |
|---|
| Symbol | |
|---|
| ID | 1183427 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 1956613 |
|---|
| End bp | 1957335 |
|---|
| Gene Length | 723 bp |
|---|
| Protein Length | 240 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637393162 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_791611 |
|---|
| Protein GI | 28868992 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1741] Pirin-related protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGACTC TTCGCAAAGC TTCCGATCGT GGCGCAGCTG ATCATGGCTG GTTGAAATCC
TTTCATACCT TTTCCTTTGC CAGCTACCGC AACGCGCAGG AACAGGGCTT TTCCGATCTG
CTGGTCATTA ATGACGACCG CGTAACCGCC GGTAAGGGTT TCGGCCAGCA TCCGCACCGC
GACATGGAAA TCTTTTCCTA CGTGCTGGAG GGTGCGCTGG AGCACAAAGA CACGCTGGGT
ACCGGCTCGG TGATTCGCCC AGGCGACGTG CAATTGATGA GTGCCGGCAG CGGCGTGGCG
CACAGTGAGT TCAATCACTC GCAGACCGAA GGTGTGCATT TCCTGCAAAT CTGGATCGTA
CCCAACGTTG CAGGCGCCAC GCCGAATTAC CAGCAGGAGC ATTTCAGCGC TGAGCAGAAA
CGCGGTCGCC TGCAACTGAT TATCTCGCCT GAAGGCGAGG ACGGTTCGCT GAAGGTTCGT
CAGGACGCCC GCGTGTACGC CGGCCTGTTC GAGGGTGATG AAACCGCAAC GCTGGAACTG
GCAGCCAACC GCTACGCCTA CGTGCATGTC GCCCGTGGCA GCGTGGTACT CAATGGCGAG
CAACTGGGCG AAGGGGACGG CGTGCGCGTG CGCAGCGAAC AGTTGATCAG CCTGAAAGAC
GGGGTGGACG CAGAAGTGCT GGTGTTTGAC ATGCGCCCTA ATGAAACGCC GCAGATGCCT
TGA
|
|---|
| Protein sequence | MLTLRKASDR GAADHGWLKS FHTFSFASYR NAQEQGFSDL LVINDDRVTA GKGFGQHPHR
DMEIFSYVLE GALEHKDTLG TGSVIRPGDV QLMSAGSGVA HSEFNHSQTE GVHFLQIWIV
PNVAGATPNY QQEHFSAEQK RGRLQLIISP EGEDGSLKVR QDARVYAGLF EGDETATLEL
AANRYAYVHV ARGSVVLNGE QLGEGDGVRV RSEQLISLKD GVDAEVLVFD MRPNETPQMP
|
|---|
| |